Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc896g00003 ATGGGGCCAAATGGTGGTGCCTTGTCAGCCGCGGCCAAGCAAGCCGAGCAACTCAGAATACACGGCAACGCTTACTTCAAGAAAGACCGTTTCGGTGCTGCCATCGATGCCTACACTGAGGCAATTACTTTGTGCCCTAATGTTCCTGTGTATTGGACGAACCGTGCTCTCTGCCATCTCAAGCGAAATAATTGGGAAAGAGTGGAGGAAGATTGTCGGAGAGCAATTCAGCTTGACAACCATTCGGTCAAGGCCCACTACATGTTGGGGCTTGCGTTGCTACAGAAACAAGAACATACCAAGGGTATCAGAGAATTAGAGAAGGCTTTGGATCTTGGGAGAGGCGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGAGAGAGCTTGCGAAAGCAAAATACCTAGAGTGGGAACGGACATCTTCCAAGCGATCGTGGGAATTGCAGAGCTTGAAGGAAGCTTGCGAGTCTGCTCTCAAGGAAAAGCACTCTCTTGATATGAACCACATGGAAGGATTTGTAGATGATTGTACCATTTCTCAATTGGAACAATTAGAGGCTTTAGAAAGAGTCTTCAGTAAAGCTGCAGAGGGTGACATCCCTACTGAGGTGCCAGATTACCTATGCTGCAGAATCACACTCGATATTTTTCATGATCCGGTAATCACTCCGAGTGGAATTACATATGAGAGGGCGGTGATTCTCGACCATTTGCAGAAGGTTGGTAGATTTGACCCTGTGACACGAGAACCACTGGATCCATCGCAACTAGTACCGAACTTGGCTATTAAGGAAGCCGTGCAGGCATTCTTGGACACACATGGGTGGGCCTACAAGGTTTAA 846 0.4764 MGPNGGALSAAAKQAEQLRIHGNAYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNNWERVEEDCRRAIQLDNHSVKAHYMLGLALLQKQEHTKGIRELEKALDLGRGANPKGYMVEEIWRELAKAKYLEWERTSSKRSWELQSLKEACESALKEKHSLDMNHMEGFVDDCTISQLEQLEALERVFSKAAEGDIPTEVPDYLCCRITLDIFHDPVITPSGITYERAVILDHLQKVGRFDPVTREPLDPSQLVPNLAIKEAVQAFLDTHGWAYKV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc896g00003 281 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Stsc896g00003 281 SUPERFAMILY RING/U-box 198 279 - -
Stsc896g00003 281 Coils Coil 149 169 - -
Stsc896g00003 281 Pfam Tetratricopeptide repeat 84 112 IPR019734 GO:0005515
Stsc896g00003 281 Pfam Tetratricopeptide repeat 22 47 IPR019734 GO:0005515
Stsc896g00003 281 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Stsc896g00003 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Stsc896g00003 281 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Stsc896g00003 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Stsc896g00003 281 CDD RING-Ubox_CHIP 205 275 IPR045202 -
Stsc896g00003 281 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Stsc896g00003 281 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Stsc896g00003 281 SUPERFAMILY TPR-like 7 131 IPR011990 GO:0005515
Stsc896g00003 281 SMART tpr_5 15 48 IPR019734 GO:0005515
Stsc896g00003 281 SMART tpr_5 49 82 IPR019734 GO:0005515
Stsc896g00003 281 SMART tpr_5 83 116 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc896g00003 Stsc-Chr896 20389 23993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc896g00003 11 281 U-box Gene Family AT3G07370 68.635 6.27e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc896g00003 K09561 - gmx:100796519 498.434