Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc896g00002 ATGCTTCGTTTGTTTTCATCTGGGTCTTATCTTTTCGAGTCATTGTCAAACCCCCCGTTTATTAAAGCATTGCAAGCTTTTACGCATGCCACCTATTCGACCATTTGCCTAGCTCAACCTAAAGCTGAAAAGGAGGATCCTGCAGAAAAACCAAATAATGCTACTGAGGTTTTGAGTAAATGGGGTTGTAGTAATGATGATTTGATGAGGATATATACCCGTTGCCCTGCTTTGCGCAATGCTGATGCTACCAAAATCCAATCAAAACTTGATCTTCTGAGTGTTATGGGAATAGGTACATCTGATCTTGTCAAGATAGTCAATTGCAGGCCCCGGTTTTTCCAGTCTCGGATTAACCAATCTTTCAACGAGAGGATTGCTTATCTCTTGTCATTGTTCGAGACCAATGATTTGCTTAACAAGGCCATTGTGAGAAACCCTTCACTTTTGATGTGTGATGATAGACATAACATTGAAGCTATTTTTTCACTCTATGAGGAGTTGGGTGTTAACAAAAGGGACTTGATTCAGATGATCGTACTGCGTCCCACGATCCTTTCAAGGACTTCGTTCGACGATGAAAAGATGGAATACATAAGTAGGATAGGGCTTTCCAGGGATTCAAAGATGCATAAGTATGTGGTAACTCTAATAGGTGTGTCACGTGTGGAAACAATTTCTGAGAAGGTTGCGAATTTGCAGAGATTTGGTTTGTCTGAAGATGAGGTCTTCTGCCTTTTAGGCAAGTCTCCTCATATTTTGACATTGTCAACTAACAAGGTTCAGAGGAACATGACTTTCATTCTGGCAACAATGAAGCTTGATGCCAAGGCAATCCTAAAATGCCCTTTTCTCTTGTGTGTTAATATGGATACGGTTTTGAAGCCAAGAGTGCTTCTAGCAATGAAGGTACATGAGATTGACGGCGAGCAGCAAATCAAGAGACCTCCGATTCTTAGGGTACTCAGGATGACAGAGGAGAAGTTTGTGAATTCTTTTATAAAATGCCATGAAAAGCAAGTTGCCAATGAGTTAATGGAATTCTATAGAGGAACAAAAAAGGTGAAGAGATTAGCCGCATCATCTAAGAAGTCCGTTTGTACTGGATTTCCTTTCTGA 1119 0.4057 MLRLFSSGSYLFESLSNPPFIKALQAFTHATYSTICLAQPKAEKEDPAEKPNNATEVLSKWGCSNDDLMRIYTRCPALRNADATKIQSKLDLLSVMGIGTSDLVKIVNCRPRFFQSRINQSFNERIAYLLSLFETNDLLNKAIVRNPSLLMCDDRHNIEAIFSLYEELGVNKRDLIQMIVLRPTILSRTSFDDEKMEYISRIGLSRDSKMHKYVVTLIGVSRVETISEKVANLQRFGLSEDEVFCLLGKSPHILTLSTNKVQRNMTFILATMKLDAKAILKCPFLLCVNMDTVLKPRVLLAMKVHEIDGEQQIKRPPILRVLRMTEEKFVNSFIKCHEKQVANELMEFYRGTKKVKRLAASSKKSVCTGFPF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc896g00002 372 SMART mt_12 69 99 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 SMART mt_12 176 205 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 SMART mt_12 276 308 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 Gene3D Transcription termination factor 3, mitochondrial 118 343 IPR038538 -
Stsc896g00002 372 PANTHER CGI-12 PROTEIN-RELATED 23 338 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 FunFam Mitochondrial transcription termination factor family protein 122 343 - -
Stsc896g00002 372 Pfam mTERF 157 329 IPR003690 GO:0003690|GO:0006355
Stsc896g00002 372 Pfam mTERF 56 186 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc896g00002 Stsc-Chr896 16877 18552 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc896g00002 mTERF 3.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc896g00002 K15031 - gmx:100799629 460.299