Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc890g00004 ATGGATCTGCAATATCCCTTCCCAGTTCAATCATTCAACTATGAATGTGATGAATTGAAATACGATGTGTTTCTTAGCTTTAGAGGCACAGACACTGGCAATCTTTATAAAGCCCTTTCCAGCAAAGGAATCAGCACCTTCTTTGATGATGAGGACATTGAAAGTGGAGATGAAATTACTCCCACACTTGTCAGAGCAATTCAAGAGTCTAGGATTGCTATCATTGAAAACGACCTCTTGGTTTTGCCAGTTTTCTATGATGTGGATCCTTCTGATGTACGCTATCAAAGAAAAAGTTTTGAAGAAGCAATGACTAAACATAATGAGAGATACAAAAATGACTTGAACAAGGTGCAAAAATGGAAGGACGCTCTGTATCAGGTGGCTAATTTGTCCGGCCATCATTTCAAAACCGGGGATGAATATGAATACATGTTTATTGGAAAGATCGTGGATAACATCTCAAAAAGGATTAGACAACGTGCAGCTTTGCGTGTTGCTGATCACCCAGTTGGACTGCAATCCCAAGCGTCAAACGTAGCTTGGCTTCTAGATGCTGAATCTAATGCTGGAGTTCACATGGTAGGGATATATGGAATTGGGGGAATAGGAAAAACCACTCTTGCTGCAGCCGTTTACAACTTCATTGCTGGCCATTTTGAAAGTGCGTGCTTTCTTGAAAATGTCAGAGACACCTCAAATAGATATGGTATTGTGCATCTCCAAAATATCCTTCTTTCTGAGATACTAGAAAAGGAAATTAAGCTAGGAAGCAGTAAACAAGGAACTTCAGAGATACAAAAGAGGTTATGTCAAAAGAAAGTTCTTTTGGTTCTCGATGATGTTAACGAGCAGGAGCAGTTGAAAGCTATTGCTGGAAAACCTGAGTGGTTTGGTCCTGGTAGCAGACTCATTATTACAACACGAGATAAACATTTGCTAACACTTCATGGTGTTAAAAGAATATACGAAACACAAGGTTTAAATGAGAAGGACTCCTTGATTTGCTTACTTGGAATGCTTTTAAATCTAATATTGTTAGTCCGAGTTATATGGATGTTTTATCTCGTGTAG 1074 0.3892 MDLQYPFPVQSFNYECDELKYDVFLSFRGTDTGNLYKALSSKGISTFFDDEDIESGDEITPTLVRAIQESRIAIIENDLLVLPVFYDVDPSDVRYQRKSFEEAMTKHNERYKNDLNKVQKWKDALYQVANLSGHHFKTGDEYEYMFIGKIVDNISKRIRQRAALRVADHPVGLQSQASNVAWLLDAESNAGVHMVGIYGIGGIGKTTLAAAVYNFIAGHFESACFLENVRDTSNRYGIVHLQNILLSEILEKEIKLGSSKQGTSEIQKRLCQKKVLLVLDDVNEQEQLKAIAGKPEWFGPGSRLIITTRDKHLLTLHGVKRIYETQGLNEKDSLICLLGMLLNLILLVRVIWMFYLV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc890g00004 357 ProSiteProfiles TIR domain profile. 19 158 IPR000157 GO:0007165
Stsc890g00004 357 SMART till_3 20 131 IPR000157 GO:0007165
Stsc890g00004 357 Gene3D - 19 76 IPR035897 -
Stsc890g00004 357 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 335 IPR044974 GO:0006952
Stsc890g00004 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 336 IPR027417 -
Stsc890g00004 357 Gene3D - 77 155 IPR035897 -
Stsc890g00004 357 Pfam TIR domain 20 75 IPR000157 GO:0007165
Stsc890g00004 357 PRINTS Disease resistance protein signature 269 283 - -
Stsc890g00004 357 PRINTS Disease resistance protein signature 194 209 - -
Stsc890g00004 357 Pfam NB-ARC domain 181 333 IPR002182 GO:0043531
Stsc890g00004 357 Gene3D - 156 320 IPR027417 -
Stsc890g00004 357 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 133 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc890g00004 Stsc-Chr890 6908 8164 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc890g00004 21 337 WRKY Transcription Factor Family AT4G12020 28.319 3.13e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc890g00004 - - ahf:112751484 426.017