Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc890g00003 ATGGCAAACCAGAAACGTAAAGATCTAGAAGTGAAATGGGATGGAACAGCTTTTAAAGAGATGGAAAATCTCAAAACACTTATCGTAAAAAATGGTTGTTTTTCCAGAGGTCCTAAACATCTTCCAAACAGTCTAAGAGTATTGGAATGGAGGAGATATCCTTCAAAATGTTTTCCATATGATTTTCATCCAAAGAAGCTCACCATACTTAAGTTACCTGAATATCTCCATTTGTTAACCAAGTTGGATAGCTTTTCCAAGGCAAGATTGAGTGGAAAAGAAATGCGTAGGATGCCATGGATCATTGGCATGATGCCACAACTATGTTCTTGCCATATTGTGGGAGGAAGCAATAAGGGAAGGGTATTAGCAAAGCAGGAGGAGGAGGGGCTTCAAGGAATGTCCACTCACGACCTCCCCTCTTCAAATGTGGAATCTCTTATTCTCAGGAACTGCGAGCTGTCAGATGTTTTTTACTCGCTAGCTTTTGCTTGGTTCCCCAATGTGACCGAGTTAGACATAAGAGGCAATAATTTCACAATCCTTCCTGAATGCATCCAAGAATTTCACTTTCTAAGGTGGCTCAATGTGGATGATTGCCACCATCTTCGAGAGATTAGAGGGATTCCACCGTGCTTGAGATACTTCTCAGCAATGAATTGCAAATCATTGAGTCCCATGGACACAAGCGTGTTACTCAATCAGGAACTGCACGAGAATGGGGAGTCCCACTTTGTTATGCCAGGAAGGATTCCAAGGTGGTTTGAGCGGCATAGCAGGAGAGCCTCTATTTCTTTCTGGTTTCGTGGCAGCTATTTCCCTGACAATGCTCTTTGCGTTGCCATTCTACTCATGGATGACCTGCATTGCAACCCAATTAGAGTAGCACCCACTCTAACCATCAACGGCAAACAAGTTTCCCAAGGCCTCGGAACCCTAATGGAGCAATTATTTGTTTTTGATCTCTCAGGAGCACTTGGCTACTATGCTTCTATTAAAGAACTACGTTTTGAAAATGAATGGAATCATGCAGAGGTTTCTTATAAAGCAGAACATTTTGCTGCAGAGGTTTCAGATAAAGCAGAACATCTTGCTGTGAGCATCCAAATTGAGTCAATTGCAAAAGAAATTGGAATTCACGGTATTTCCCAACCACAAGAACCAACCCTTGTTCCTGGAAACACGAATTGGTTTGTGGACATTGCTCTTTCTAACACACAAGGCTTTGGGCAACAACACTCTCACTAG 1248 0.4231 MANQKRKDLEVKWDGTAFKEMENLKTLIVKNGCFSRGPKHLPNSLRVLEWRRYPSKCFPYDFHPKKLTILKLPEYLHLLTKLDSFSKARLSGKEMRRMPWIIGMMPQLCSCHIVGGSNKGRVLAKQEEEGLQGMSTHDLPSSNVESLILRNCELSDVFYSLAFAWFPNVTELDIRGNNFTILPECIQEFHFLRWLNVDDCHHLREIRGIPPCLRYFSAMNCKSLSPMDTSVLLNQELHENGESHFVMPGRIPRWFERHSRRASISFWFRGSYFPDNALCVAILLMDDLHCNPIRVAPTLTINGKQVSQGLGTLMEQLFVFDLSGALGYYASIKELRFENEWNHAEVSYKAEHFAAEVSDKAEHLAVSIQIESIAKEIGIHGISQPQEPTLVPGNTNWFVDIALSNTQGFGQQHSH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc890g00003 415 SUPERFAMILY RNI-like 13 226 - -
Stsc890g00003 415 Gene3D Ribonuclease Inhibitor 6 259 IPR032675 -
Stsc890g00003 415 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 209 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc890g00003 Stsc-Chr890 4363 6291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc890g00003 9 220 WRKY Transcription Factor Family AT4G12020 25.397 2.86e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc890g00003 - - ahf:112751488 307.76