Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc890g00001 ATGGATCTACAATCTCCCTTCTCCTCATCAACTCGTTCCTTAAACTTTCAGTCTGAATGGAAATACGATGTGTTTCTTAGCTTTAGAGGCAAAGACACTCGCTACAGTTTCACCGGCAATCTTTATGAAGCACTCTCCCGCAAAGGAATCCAAACCTTCTTTGATGATGATGACATTCAAAGTGGAGACGAAATTACTCCCACACTTCTCAAATCAATTCAGGAGTCCAGGATTGCTATCATTATCCTCTCTCCGGACTATGCTGCTTCTTCTTTTTGCTTAGATGAGCTTGTTCACATCCTTCGTTGCATTAAGGCAAATAATCGCTTGGTTGTGCCGGTTTTCTATGACGTGGATCCTTGTGATGTACGCCATCAAAGAAACAAGTTCAAAGAAGCAATGGATAAGCATGAGAAGAGATACAAGGATGACATGAACAAGGTGCAAAAATGGAAGGAGGCTCTGCATCAAGTGGCTAATTTGTCTGGCTATCATTTCAAACACGGGAAAGGATATGAACACATGTTTATTGCAAACATTGTGAAAAACATCTCAAAAAGGATTACACGATGCCCAGCTTTGCATGTTGCTGAACACCCAGTTGGACTGCAATCCCGAGTGTCAAAGGTAGCTTCGCTTCTAGATGTTGAATCTAATGCTGGAGTTCACATGGTAGGGATACATGGAATTGGGGGAATAGGAAAAACCACTCTTGCTGCTGAAGTTTACAACTTGATTGCTGACCATTTTGAAGGTGTGTGCTTTCTTGAAAAAGTGAGAGAAAATTCAAAAAGATACGGTTTAGTACATCTCCAAAATATCCTTCTTTCTGAGATATTAGGAGAGAATGATATTAATCTAGCAAGTAGTAAACAAGGAGCTTCAAAGATACATAACAGGCTATGTCGAAAGAAAGTTCTTTTGGTTCTCGATGATGTTGATGATCCAGAGCAGTTGAAAGCTATTGCTGGAAAACCTGAGTGGTTTGGTACTGGTAGCAGAGTCATTATTACAACACGGGATAAACATTTGCTAACACTTCATGGTGTTGAAAGAACATATGAAGTACAAGGTTTAAATGAGGTGGACTCCTTAAATTTGCTTACTTGGAATGCTTTCAAATCTGATATTGTTAGTCCAAGTTACATGAATGTTTTATCCCGTGTAGTGGCTTATGCTTCTGGGCTTCCATTGGCTTTGGAAGTAATAGGTTCTAACTTGTTTGGAAAGGATTTACAAGAATGGGAATCTGCATTGGATCAATATGAAAGAAATAATCTTGATAATAAGATACGTAAGATCCTTCAAATAAGTTTTGATGCTTTGGGAAAAGATGAACACAGTGTTTTTCTCGACATTGCTTGTTTTTTTAAAGGATATGCATTAGATGAAGTCATAGATCTGCTTCAAGCTCATTATGGGAGTTGCATGAAATATCATATTGGAGTGTTGGTTCAAAAATCTCTCATAAAGATCATCGGGTATCATTCGAAATTGCAAATACATGATTTGATAGAAGACACAGGCAAACAAATTTTTCTAGAAAAATCACCGGAAATGCCTGGAAATCGCAGTAGGTTATGGTCTTGTGAAGATATAGTAGAAGTTTTAGAAAATAATCAAGGGACTAGTGCCATTGAAATTATTGTTCATACCGGCCCAATTCGCCTAAATCTTCTGGGCCGGCCCACTTGGAAAACAAGTCCCAACCGAACTTGA 1719 0.3863 MDLQSPFSSSTRSLNFQSEWKYDVFLSFRGKDTRYSFTGNLYEALSRKGIQTFFDDDDIQSGDEITPTLLKSIQESRIAIIILSPDYAASSFCLDELVHILRCIKANNRLVVPVFYDVDPCDVRHQRNKFKEAMDKHEKRYKDDMNKVQKWKEALHQVANLSGYHFKHGKGYEHMFIANIVKNISKRITRCPALHVAEHPVGLQSRVSKVASLLDVESNAGVHMVGIHGIGGIGKTTLAAEVYNLIADHFEGVCFLEKVRENSKRYGLVHLQNILLSEILGENDINLASSKQGASKIHNRLCRKKVLLVLDDVDDPEQLKAIAGKPEWFGTGSRVIITTRDKHLLTLHGVERTYEVQGLNEVDSLNLLTWNAFKSDIVSPSYMNVLSRVVAYASGLPLALEVIGSNLFGKDLQEWESALDQYERNNLDNKIRKILQISFDALGKDEHSVFLDIACFFKGYALDEVIDLLQAHYGSCMKYHIGVLVQKSLIKIIGYHSKLQIHDLIEDTGKQIFLEKSPEMPGNRSRLWSCEDIVEVLENNQGTSAIEIIVHTGPIRLNLLGRPTWKTSPNRT 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc890g00001 572 PRINTS Disease resistance protein signature 393 407 - -
Stsc890g00001 572 PRINTS Disease resistance protein signature 300 314 - -
Stsc890g00001 572 PRINTS Disease resistance protein signature 224 239 - -
Stsc890g00001 572 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 540 IPR044974 GO:0006952
Stsc890g00001 572 Gene3D - 187 351 IPR027417 -
Stsc890g00001 572 Pfam NB-ARC domain 205 440 IPR002182 GO:0043531
Stsc890g00001 572 Gene3D - 358 443 IPR042197 -
Stsc890g00001 572 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 164 IPR035897 -
Stsc890g00001 572 Coils Coil 127 154 - -
Stsc890g00001 572 SMART till_3 21 161 IPR000157 GO:0007165
Stsc890g00001 572 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 190 - -
Stsc890g00001 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 453 IPR027417 -
Stsc890g00001 572 SUPERFAMILY "Winged helix" DNA-binding domain 429 538 IPR036390 -
Stsc890g00001 572 Pfam TIR domain 21 187 IPR000157 GO:0007165
Stsc890g00001 572 ProSiteProfiles TIR domain profile. 20 188 IPR000157 GO:0007165
Stsc890g00001 572 Coils Coil 412 432 - -
Stsc890g00001 572 Gene3D - 15 186 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc890g00001 Stsc-Chr890 30 2017 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc890g00001 16 549 WRKY Transcription Factor Family AT4G12020 30.983 2.21e-55 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc890g00001 - - ahf:112751484 764.992