Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc88g00024 ATGCAGTCGCACCTTCTGACTGCTCCCATCTGCGGTAGCGCCACCGCGTTTCCCTCCGTCGCTGACTCATCTCCCTTCTTCTCTTCCTCTCCTCCCATCTCCATCCGCCGCCGTCTCCGCTCCGCCTCCCCATTCATAGCCGCATCATCATCTTCTTTTTCCTCTTCGTCGCCGTCCGCCGCCGCAGGTAGCCAGAGCCTATACACGGTGCTCGGCATCCCTACCACCGCCACTGCCGCTGAGATCAAACGCGCTTACCGGCTCCTCGCCCGCAAGTATCACCCTGATGTTAGCGAAGATTTACAAGCAGCTGAATTGTTCAAGAGCATCCGTCATGCATATGAAGTACTATCCAATGAAGTAACAAGAATTCAGTATGATAGAGAGCTTCAATATGGTCACAAACCTTACAGAGAAAAATTTAGTCACAGCACTGAGTTTGAAGACCAAGTAAGAATCTACAGGTGGGCCAACCTGAGGAGGAGAATGTATAATGAAAGATACTCAGAGCATTATAATGTCGATGAGGGTTATTATACCACTGAAATAGACGAGGAGGAAGATGAAGATTTAGAAGAAGAGAGAGGCTCCTTTATTGAAGTGCTTAGATCAGCATTCATGTCTATATTTTTGTTTCAGACATTAGGGTCCCGCCTTTCTCTCACGTTTAGCAGTGTGATGGCATTGCTGGATGAGAAGTTAGATAATGGATATAAGATTGGTTATGTGATAGCATGGATTATGGGCGGAAGGAGTGGCATATTGCTAACAATGTGCTTGTCATTTGCAAGTTGGGTTTGTGGGAAAACCAGTAGTAGTGCAGTGGCACTGGTGATGGTAGCCATGTGGGTCGGTTCCTACCTTTCAAGGTACGCTCCACTTCCTCAAGGTGCTCTGCTAACGCTACTCTATATGTCGATTAAGATGCAATCTGATCATGTATAA 945 0.472 MQSHLLTAPICGSATAFPSVADSSPFFSSSPPISIRRRLRSASPFIAASSSSFSSSSPSAAAGSQSLYTVLGIPTTATAAEIKRAYRLLARKYHPDVSEDLQAAELFKSIRHAYEVLSNEVTRIQYDRELQYGHKPYREKFSHSTEFEDQVRIYRWANLRRRMYNERYSEHYNVDEGYYTTEIDEEEDEDLEEERGSFIEVLRSAFMSIFLFQTLGSRLSLTFSSVMALLDEKLDNGYKIGYVIAWIMGGRSGILLTMCLSFASWVCGKTSSSAVALVMVAMWVGSYLSRYAPLPQGALLTLLYMSIKMQSDHV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc88g00024 314 SUPERFAMILY Chaperone J-domain 64 137 IPR036869 -
Stsc88g00024 314 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 144 300 - -
Stsc88g00024 314 SMART dnaj_3 65 122 IPR001623 -
Stsc88g00024 314 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Stsc88g00024 314 PRINTS DnaJ domain signature 68 86 IPR001623 -
Stsc88g00024 314 PRINTS DnaJ domain signature 86 101 IPR001623 -
Stsc88g00024 314 PRINTS DnaJ domain signature 102 122 IPR001623 -
Stsc88g00024 314 Pfam DnaJ domain 67 127 IPR001623 -
Stsc88g00024 314 CDD DnaJ 68 119 IPR001623 -
Stsc88g00024 314 Gene3D DnaJ domain 63 200 IPR036869 -
Stsc88g00024 314 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc88g00024 Stsc-Chr88 117305 119846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc88g00024 68 127 C2H2 Transcription Factor Family AT1G74250 41.791 8.46e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc88g00024 - - adu:107494507 470.7