Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc88g00016 ATGGACTCCAAAACAGAAAGTGGCAACTCAAGTGGTACTGATCAATCAGAGCCAAAGAATATATACAAAGATCCAGATGATGGACGGCAACGGTTCTTGCTTGAATTGGAATTTGTTCAATGCCTTGCTAACCCCACCTACATTCACTATTTGGCTCAAAATCGGTATTTTGAGGATGAAGCTTTCATTGGATACTTAAAGTATCTTCAATATTGGCAGCGCCCTGAGTATATTAAATTTATTATGTATCCTCATTGCCTCTATTTTCTTGAGCTTCTACAAAATGCAAATTTTCGCAATGCAATGGCACATCCTAACAATAAGGAGCTGGCACATAGGCAACAATTCTACTTCTGGAAGAACTACCGAAACAATCGGCTAAAACACATTTTGCCTAGATCACTTCCCGAGCCTGCTGCCACAACTGCGGCTGCAACTCCAGCTCAGCCACCTGTGCCGGCGGCATTGCCACCAGTACCTGCCACAAGTGTTGCAGTGACAGCTTCATCTACGCAAACTCAAGCTCCTTCTCCAATGCCGTACGGTATGCCCCCTGGATCTGGTCTTGCAAAAAATGAAATGAGGAATCCTTCAATGGATAGAAGGAAGAGGAAGTGA 618 0.4385 MDSKTESGNSSGTDQSEPKNIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPNNKELAHRQQFYFWKNYRNNRLKHILPRSLPEPAATTAAATPAQPPVPAALPPVPATSVAVTASSTQTQAPSPMPYGMPPGSGLAKNEMRNPSMDRRKRK 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc88g00016 205 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
Stsc88g00016 205 MobiDBLite consensus disorder prediction 1 18 - -
Stsc88g00016 205 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 9 205 IPR008831 GO:0003712|GO:0006355|GO:0016592
Stsc88g00016 205 MobiDBLite consensus disorder prediction 1 23 - -
Stsc88g00016 205 MobiDBLite consensus disorder prediction 163 177 - -
Stsc88g00016 205 FunFam Mediator of RNA polymerase II transcription subunit 31 18 119 - -
Stsc88g00016 205 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Stsc88g00016 205 MobiDBLite consensus disorder prediction 141 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc88g00016 Stsc-Chr88 79389 82190 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Stsc88g00016 Med31 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc88g00016 K15153 - gmx:100527879 308.531