Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc88g00006 ATGACGGCGAAAGTGTCCAAGGCGGCGTTCGACGCCAAGATGTGGAAGCTACTGAGGGAGTACAGCCAGGTCCTGGTGGTTACCTCCGATAACGTTGGTTCCAACCAGATTAACGGCATTCGGAGGGGTTTGAAGGGCGATTCCGTGGTCGTTATGGGCAAGAACTCCATGATGAGACGCTCTTTCATGCTCCAAGCTCAGAAAACTGGAAACAAGTCTTTTCTCAACCTTATCCCTCTCCTTAGGGGAAATGTGGCATTGATTTTCACGAAAGAGGATATGAAGGAGGTTAGCAATGAGGTTGCCAAGTTCAAGGTTGTTGATCCTCTTCTCATGTGCCCCAAGTACTTATCATATGAATCGTACCGCAATTGTTCCTACATGCAATCTGGACAGTTACCTTTGGGCCTCAAGTGTTGTAACCAGCAGTCGTCGCAGGACTCTGAGCCTTTTCTTGTGTCCTCAAAATTCACACCGCACCAGCATTGTGCCCTGATGAGATCAAAACAGTTCTTGGCAATGAGTGTATGGTCTCCTCTTCTCCTTTTAGCTGGTAGCATGTGA 564 0.4805 MTAKVSKAAFDAKMWKLLREYSQVLVVTSDNVGSNQINGIRRGLKGDSVVVMGKNSMMRRSFMLQAQKTGNKSFLNLIPLLRGNVALIFTKEDMKEVSNEVAKFKVVDPLLMCPKYLSYESYRNCSYMQSGQLPLGLKCCNQQSSQDSEPFLVSSKFTPHQHCALMRSKQFLAMSVWSPLLLLAGSM 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc88g00006 187 SUPERFAMILY Ribosomal protein L10-like 6 105 IPR043141 -
Stsc88g00006 187 Gene3D - 3 118 IPR043141 -
Stsc88g00006 187 Pfam Ribosomal protein L10 6 104 IPR001790 -
Stsc88g00006 187 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 3 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc88g00006 Stsc-Chr88 25243 27240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc88g00006 1 109 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 61.062 7.05e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc88g00006 K02941 - cpap:110819288 145.591