Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc88g00003 ATGGAGAAGAAGGAATTGGATACTACCAACACCGCCAATGCTGCTCTTCACCCGCTCAAGAACAAATTCGTACTGTGGTACACTCGTAGAACACCCGGAGTTCGAAACCACACCTCAGATTCGTACGAAGACAGCATCAAGAAGATTGTCCATTTCAGTACTGTTGAAGGATTTTGGGTGTGCTATTGCCATCTATCTCGCCCTTCTGCCTTGCCAGTTCCCACTGATTTGCACCTTTTTAAGGAAGGAATCCGCCCTTTGTGGGAGGATTCTGCTAACTGCAATGGTGGTAAGTGGATTATTCGATTCAATAAGGTTGTCTCGGGCCGTTTTTGGGAAGACCTGGTTCTTGCCTTAGTGGGTGACCAACTAGATTATGGAGATGACATCTGTGGTGCAGTACTAAGCATTCGTTTCAACGAAGACATAGTGAGTGTCTGGAATCGCAATGCTTCTGATAATCAGGCTATAATGGGTCTGAGAGATTCAATCAAGCGTCATCTAAAGCTTCCCCATGGATATGTTATGGAGTATAAGCCCCACGACGCCTCTCTGCGTGACAATTCCTCTTACAGAAACACCTGGTTGAGAGGCTAG 597 0.4623 MEKKELDTTNTANAALHPLKNKFVLWYTRRTPGVRNHTSDSYEDSIKKIVHFSTVEGFWVCYCHLSRPSALPVPTDLHLFKEGIRPLWEDSANCNGGKWIIRFNKVVSGRFWEDLVLALVGDQLDYGDDICGAVLSIRFNEDIVSVWNRNASDNQAIMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc88g00003 198 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 7 187 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc88g00003 198 Pfam Eukaryotic initiation factor 4E 18 178 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc88g00003 198 SUPERFAMILY eIF4e-like 11 194 IPR023398 -
Stsc88g00003 198 ProSitePatterns Eukaryotic initiation factor 4E signature. 76 99 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Stsc88g00003 198 Gene3D RNA Cap, Translation Initiation Factor Eif4e 1 191 IPR023398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc88g00003 Stsc-Chr88 10457 13281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc88g00003 17 198 Eukaryotic Initiation Factors Gene Family AT5G18110 83.516 4.04e-116 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc88g00003 K03259 - qsa:O6P43_009857 357.451