Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc88g00001 ATGACAATTCTAACCTTCCTTCTTTTCACCATCCCCACCCTGTTACTCTTGTTCTTGCATCAAGTTTCTTCTACAAACGATACCATAACACAATCTGAACCACTTCACGATGATGGTAGCACAATAACTTCCAAGGGTGGAATCTTTGAGCTGGGTTTCTTCAACCCAGGTAATTCCACAAACCGTTACGTAGGAATATGGTACAAGAACATCTCCGTTAGGAGAGTTGTTTGGGTCGCAAACCGCGACGATCCAATCAAAGACAACTCCGGCGTGCTTCGCATAAGCGAAGACGGAAATCTCGTGCTTTCGATGAAAAATCAAACGCTTGTTTGGTCAGCAAACTCGACGACGACGGCGAAGGCGGCGGTTGCACGGCTCTTAGACAGTGGAAATTTAGTGCTAAGAGAAGATAACAAAGAAGATGATGAGGAAGAGGGGTTGTTATGGCAGAGTTTTGATTATCCATGTGATACGCTGCTTCCAGGAATGAAGCTTGGATATGATTTGAGAAGTGGCTTGGATAGGAAGCTAACTGCCTGGAAGAACTGGGATGATCCATCAACTGGGAATCTTTCTTGGGCCATGATGCTTACTAGTGACCCTGAATTGGTGCTGTGGAAAGGGTCAGTGAAGTATCACAGGAGTGGACCATGGGCTGGCCTTGGATTCAGTGGAGCACCCTTATGGAGGGGCACTCAACTTGTTCTTCAAAACATGATCAACACCACCAGCGAAGTCTACTACACCTACACCCTCATACAAGGCACTTCCATGATCACAATCACCCTCGTAAACCAAACCCTAAACCTTCGTCAACGAATCGTATGGGTCCCACAAGAAAACACATGGAAGTCCTTCCAATCTGTCCCCGGGGATCCCTGTGACATTTACAACACTTGCGGCCCCTTTGGCTATTGCATTTCGAACCGATCACCAAATTGCGAGTGCTTAGAAGGATTCACTCCCAAATCGCCAGAGAGTTGGGATACAATCGATTATTCACAGGGCTGTGTGAGGAGTGATCCGTGGAGCTGTAAGGTTAAAGATAAAGATGGGTTTCGCAAGATTTCTGGGTTGAAATTGCCGGATACTACGCATTCTTGGGTTGATGGAAGTATGAAGCTTGAGGATTGTGGAGCAAAGTGCATGGGGGATTGTTCTTGTACTGGTTATTCAACGTTGAATGCGAGTGATGGCAGTGGCTGTGTTATTTGGTTTGATGATCTTCTTGATTTAAGAGTTTCTGACGGAGGACAGGATTTGTATGTCAGAATGGCTCATTCAGAGAAAACAACAATGCCTGAAGAAAAAAAAGAGGAAAGAGGACAAGAAGATTTAGAGCTTCCCATTTACGACCTTGCTACAATAGTGAAGGCCACTAACAACTTCTCAATTCACAATAAACTTGGGGAAGGAGGGTTTGGGCCAGTATATAAGGGTACACTTGAAACTGGACAAGAAATTGCAGTGAAACGACTCTCAGGAAGTTCTGCACAAGGAATGATTGAATTTAAAAATGAAGTAATATTGTGTGCTAAACTTCAACATCGGAATCTTGTTAGGGTTCTTGGATGTTGCATTCAAGAAGATGAGAAGATGCTAGTTTATGAATACATGTCTAACAAAAGCCTTGACTTATTTCTTTTCGACTCAATTCAAAGCAAATTTTTGGATTGGTCTAAGCGCTTTGACATTATTTGTGCAATTGCTCGAGGGCTTCTTTATCTTCATCAAGATTCCAGATTAAGAATTATACATAGAGATCTTAAGGCGAGCAACATTTTATTAGACTACAATATGAATGCAAAAATCTCCGACTTTGGCATGGCAAGATTGCGTGGGGGTGATCAAGATGAAGGAAATACAAATAGAATTGTTGGAACATATGGTTATATGGCTCCAGAATATGCTATCGACGGCTTATTCTCCACAAAATCAGATGTATTTAGCTTTGGCATACTAATGCTAGAGATTATAAGTGGAAAGAAAAACAAAGGACTTACCTATTCAGGCAATAGCTATAATCTCATGGGACATGCATGGAGGTTGTGGAATGAAGGCAACTTAAACGAATTGATTGATGATTGTTTAAGGGATGATTCATCATTTACTAATAATAATAATCCAAGAGAAATTTATCGCTGCATTCATATTGGTCTTTTATGTTTGCAACGTCATCCAGATGACAGACCAACAATTGCAACGGTGGTTAAGATGTTAAATAATGACAACACATTGCCACAACCAAAGGAACCTGGTTTCTTGATTCATGATGGAATATCACCCGATCGTGAAAGAAGGGATACTTCTTCTTCAATTAATGAA 2328 0.4167 MTILTFLLFTIPTLLLLFLHQVSSTNDTITQSEPLHDDGSTITSKGGIFELGFFNPGNSTNRYVGIWYKNISVRRVVWVANRDDPIKDNSGVLRISEDGNLVLSMKNQTLVWSANSTTTAKAAVARLLDSGNLVLREDNKEDDEEEGLLWQSFDYPCDTLLPGMKLGYDLRSGLDRKLTAWKNWDDPSTGNLSWAMMLTSDPELVLWKGSVKYHRSGPWAGLGFSGAPLWRGTQLVLQNMINTTSEVYYTYTLIQGTSMITITLVNQTLNLRQRIVWVPQENTWKSFQSVPGDPCDIYNTCGPFGYCISNRSPNCECLEGFTPKSPESWDTIDYSQGCVRSDPWSCKVKDKDGFRKISGLKLPDTTHSWVDGSMKLEDCGAKCMGDCSCTGYSTLNASDGSGCVIWFDDLLDLRVSDGGQDLYVRMAHSEKTTMPEEKKEERGQEDLELPIYDLATIVKATNNFSIHNKLGEGGFGPVYKGTLETGQEIAVKRLSGSSAQGMIEFKNEVILCAKLQHRNLVRVLGCCIQEDEKMLVYEYMSNKSLDLFLFDSIQSKFLDWSKRFDIICAIARGLLYLHQDSRLRIIHRDLKASNILLDYNMNAKISDFGMARLRGGDQDEGNTNRIVGTYGYMAPEYAIDGLFSTKSDVFSFGILMLEIISGKKNKGLTYSGNSYNLMGHAWRLWNEGNLNELIDDCLRDDSSFTNNNNPREIYRCIHIGLLCLQRHPDDRPTIATVVKMLNNDNTLPQPKEPGFLIHDGISPDRERRDTSSSINE 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc88g00001 776 CDD STKc_IRAK 470 743 - -
Stsc88g00001 776 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Stsc88g00001 776 SMART ntp_6 349 426 IPR003609 -
Stsc88g00001 776 CDD PAN_AP_plant 345 427 - -
Stsc88g00001 776 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 731 - -
Stsc88g00001 776 SUPERFAMILY Protein kinase-like (PK-like) 449 741 IPR011009 -
Stsc88g00001 776 MobiDBLite consensus disorder prediction 758 776 - -
Stsc88g00001 776 SMART serkin_6 464 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc88g00001 776 PIRSF SRK 430 776 IPR024171 GO:0004674
Stsc88g00001 776 PIRSF SRK 1 444 IPR024171 GO:0004674
Stsc88g00001 776 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Stsc88g00001 776 CDD B_lectin 38 156 IPR001480 -
Stsc88g00001 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 153 - -
Stsc88g00001 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 428 539 - -
Stsc88g00001 776 SMART blect_4 32 156 IPR001480 -
Stsc88g00001 776 Gene3D Phosphorylase Kinase; domain 1 424 539 - -
Stsc88g00001 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Stsc88g00001 776 MobiDBLite consensus disorder prediction 745 776 - -
Stsc88g00001 776 Pfam Protein tyrosine and serine/threonine kinase 465 741 IPR001245 GO:0004672|GO:0006468
Stsc88g00001 776 CDD EGF_CA 293 325 - -
Stsc88g00001 776 Gene3D Transferase(Phosphotransferase) domain 1 540 751 - -
Stsc88g00001 776 Gene3D - 20 153 IPR036426 -
Stsc88g00001 776 Pfam D-mannose binding lectin 76 182 IPR001480 -
Stsc88g00001 776 ProSiteProfiles Protein kinase domain profile. 464 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc88g00001 776 ProSiteProfiles PAN/Apple domain profile. 346 427 IPR003609 -
Stsc88g00001 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 187 IPR036426 -
Stsc88g00001 776 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 540 749 - -
Stsc88g00001 776 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Stsc88g00001 776 Pfam PAN-like domain 346 413 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc88g00001 Stsc-Chr88 126 4755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc88g00001 423 758 Receptor kinase-like Gene Family AT4G23230 54.896 1.01e-118 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc88g00001 PK_Tyr_Ser-Thr 7.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc88g00001 - - gmx:100790436 962.214