Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc880g00003 ATGGGTCCAATCTATAACTTGCTTGATCCTACTTGCGTAGATCCCTCCAAGTATTTCTTCTGGGACGCAATACACCTTACAGAAACAAGATACAAGTTCCTTGCTGAGAGTGAATCAAGCAGGCACAGGAGGGCTAGTGGTTACAATGAAGAAAGTAAGAAAGAATCTTCTTCATATTTGTACAATAAAGTCAATGATAGTTCTTCATCTTCTCAATCCATGTCAATGATTGCAACTAATGTTCCTGACGAACTTCGCTGCCCGATTTCTCTTGACTTAATGAGGGATCCTGTGATTGTTTCATCCGGCCACACCTATGGTCGGAATTCGATAGCGCAGTGGATAAACTCTGGCCACCATACTTGCCCCAAAAGTGGACAGAGGCTGATTCACACTGCTCTGATACCAAACTATGCACTCAAAAGTCTTGTTCAGCAATGGTGCCATGACAACAATGTTCCAGTGAATGAGCCTAATTCTTCAGTTTCCGAGGAAAAGAGCAACAAGAAGACCTCGAACAAGGTGCTATCGATCACATCTCTGCCAACAAAGCCGCTGCAGATGCTGTGA 570 0.4368 MGPIYNLLDPTCVDPSKYFFWDAIHLTETRYKFLAESESSRHRRASGYNEESKKESSSYLYNKVNDSSSSSQSMSMIATNVPDELRCPISLDLMRDPVIVSSGHTYGRNSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHDNNVPVNEPNSSVSEEKSNKKTSNKVLSITSLPTKPLQML 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc880g00003 189 Gene3D SGNH hydrolase 2 41 IPR036514 -
Stsc880g00003 189 FunFam RING-type E3 ubiquitin transferase 80 154 - -
Stsc880g00003 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 156 IPR013083 -
Stsc880g00003 189 Pfam U-box domain 81 151 IPR003613 GO:0004842|GO:0016567
Stsc880g00003 189 PANTHER U BOX DOMAIN-CONTAINING 40 160 - -
Stsc880g00003 189 SUPERFAMILY RING/U-box 68 155 - -
Stsc880g00003 189 ProSiteProfiles U-box domain profile. 80 154 IPR003613 GO:0004842|GO:0016567
Stsc880g00003 189 SMART Ubox_2 84 147 IPR003613 GO:0004842|GO:0016567
Stsc880g00003 189 CDD RING-Ubox_PUB 82 134 IPR045210 -
Stsc880g00003 189 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc880g00003 Stsc-Chr880 20782 22452 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc880g00003 54 154 U-box Gene Family AT5G01830 48.515 1.95e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc880g00003 - - gmx:100793498 166.392