Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc880g00002 ATGGAAGCCAGAGAGAATGCTGCAGCAACTATATTCAGCTTGACTATGCTAGATGAATGCAAGGTTCAAATCGGGGCGCGGCCGAGGGCGGTTCCTGCATTAGTACTGCTCTTGAAAGAAGGAACACCAATTGGGAAAAGGGATGCAGCAACTGCACTATTCAACCTTGCGGTTTACAATCCAAACAAATCAATAATTGTGAATTCTGGTGCAGTTGATGTGCTTATTGAATTGCTAATGGATGATAAAGCTAGCATTACTGATGATGCATTATCTGTTCTTACTTTGTTACTTGGATTGTGTAAGGAAGAGACCGAGGTGGTTGCGCGGCAGCTGTTGGCGAATCCACGGAGTGTGCCATGCATTGTTAAGGTTGCTAAATAG 384 0.4427 MEARENAAATIFSLTMLDECKVQIGARPRAVPALVLLLKEGTPIGKRDAATALFNLAVYNPNKSIIVNSGAVDVLIELLMDDKASITDDALSVLTLLLGLCKEETEVVARQLLANPRSVPCIVKVAK 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc880g00002 127 Gene3D - 1 127 IPR011989 -
Stsc880g00002 127 Pfam Armadillo/beta-catenin-like repeat 60 95 IPR000225 GO:0005515
Stsc880g00002 127 PANTHER U BOX DOMAIN-CONTAINING 2 125 - -
Stsc880g00002 127 SMART arm_5 59 99 IPR000225 GO:0005515
Stsc880g00002 127 SMART arm_5 20 58 IPR000225 GO:0005515
Stsc880g00002 127 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 29 71 IPR000225 GO:0005515
Stsc880g00002 127 SUPERFAMILY ARM repeat 2 110 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc880g00002 Stsc-Chr880 19827 20528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc880g00002 1 109 U-box Gene Family AT2G28830 51.376 2.63e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc880g00002 - - gmx:100793498 174.866