Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc880g00001 ATGCTCATCCTTCCTGAGTATGTGAAAGTAGTTACCCTGAGAAACAAGAAACATGCTGGTGAGGATATGAAGTTTTGGGATGGAGGAAATGAGGGTTACAATGAAGAAAGTAAGAAAGAATCTTCTTCATATTTGTACAATAAAGTCAACGATAGTTCTTCATCTTCTCAATCCATGTCAATGATTGCAACTAATGTTCCTAACGAATTTCGCTACCCGATTTCTCTTGACTTAATGAGGGATCCTAGGCTAATTCACACTGCTCTGATACCAAACTATGCACTCAAAAGTCTTGTTCAGCAATGGTGCCATGACAACAATGTTCCTGTGAATGAGCCTAATTCTTCAGTTTCCGAGGAAAAGAGCAATAAGAGGAACTCCAACGAAGGGGCTATCGATCACAACTCTGCCAACAAAGCCGCTGCAGATGCTGTGAAAATGACAGCAGCGTTTCTTGTTGGGAAATTGGCAACAGGCTCAGCTGAAACACAAAGACAAGCTGCATACGAGCTTCGTTTGCTCGCGAAAACCGGCATGGACAACCTGCGAATCATATCAGAGGTAGGTGCTATTCCTTTTCTGGTAACACTACTCGGATCACATGATCCAAGAATCCAGGAACATGCTGTGACT 633 0.4265 MLILPEYVKVVTLRNKKHAGEDMKFWDGGNEGYNEESKKESSSYLYNKVNDSSSSSQSMSMIATNVPNEFRYPISLDLMRDPRLIHTALIPNYALKSLVQQWCHDNNVPVNEPNSSVSEEKSNKRNSNEGAIDHNSANKAAADAVKMTAAFLVGKLATGSAETQRQAAYELRLLAKTGMDNLRIISEVGAIPFLVTLLGSHDPRIQEHAVT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc880g00001 211 SUPERFAMILY RING/U-box 53 110 - -
Stsc880g00001 211 PANTHER U BOX DOMAIN-CONTAINING 36 211 - -
Stsc880g00001 211 MobiDBLite consensus disorder prediction 110 135 - -
Stsc880g00001 211 Gene3D - 96 211 IPR011989 -
Stsc880g00001 211 SUPERFAMILY ARM repeat 152 210 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc880g00001 Stsc-Chr880 30 1371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc880g00001 66 211 U-box Gene Family AT3G54850 37.500 6.13e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc880g00001 - - gmx:100793498 201.445