Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc87g00004 ATGAGAAGCCCCTTGGATCGTCTCGGAATCGGGTTGCAACTAAGGCAGGTGCCGGCTGGGTGGGATGTCGAGTCAATTTGCAAACCTTATTCTTCTTGGGTTCTGTCTTCTCCACCTCTTTGCTTTAAGATGGTAGTAAGTGACTATGTCTGGAGTGGCCAAAGCAAAATCAAGGGAGATGAGGACGAGGACGGACATTTTCTTAATTTCATTCAATGTGAACGTACATATCATTTTGGGTGCTTGAGAAATAGAACAGTAGATGAGTTAATACATATGGAAAAATGGTTCTGCGGAAACAAATGTGAACAGATATACACCAACCTGCATAAACTATTAGGAAAGCCAATTTTAGTGGATGCAAACAATCTAACTTGGACATTGGTCAAGTCTGTTGACTCTGAGAATTGTGATGTTGATTCTGCTAAAGACGAATACTTGGCAGAGAATTACAGCAAACTCAATATTGCACTTTCTGTGATGCATGAATGCTTTGAGCCCCTACAGAACCCTTCCTCTAGCAGAGATCTCATGGAAGATGTCATATTCAGAAGATGGTCAGAAAAAAGCTTTTCCTCCAATTCCTGA 588 0.4133 MRSPLDRLGIGLQLRQVPAGWDVESICKPYSSWVLSSPPLCFKMVVSDYVWSGQSKIKGDEDEDGHFLNFIQCERTYHFGCLRNRTVDELIHMEKWFCGNKCEQIYTNLHKLLGKPILVDANNLTWTLVKSVDSENCDVDSAKDEYLAENYSKLNIALSVMHECFEPLQNPSSSRDLMEDVIFRRWSEKSFSSNS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc87g00004 195 PANTHER PHD FINGER PROTEIN 12 60 190 IPR042163 GO:0003714|GO:0045892
Stsc87g00004 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc87g00004 Stsc-Chr87 19850 20883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc87g00004 67 188 PHD Transcription Factor Family AT5G58610 48.000 1.12e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc87g00004 - - adu:107471457 231.106