Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc87g00003 ATGGCTGGTGCACTTGTTGGTGGAGCGTTTCTCTTTGGTTTCATTAATGTTGTCCTTGACAGGTTCCTTTCTTCGGAGGCAGCTAACTTGGTAATCGGCAAGAAGCTTGGTCCTGACTTGGTTGAAAGGCTAAGGATTTCCCTACATGCTGCTGAAGCGTTGGTTGATGATACTGAGTACAAGCAATTGGACAACCCTTCTGTGAGGGACTGGCTCAACAGTCTCAAGGATGCTGTGTACGTGGCTGATGACTTGCTGGACGTTGTCTTCACCAAAGCTGCCTCTACTCAAAAGGAGGTGCGTTCTTTCTGGCCCATTGTTAGCTTCCTCAACCGAGATAGGGACATGGTAGCTAAGATGGAAGGGGTGGTTAGAAGAATTGAATATCTTGAAAAACAAAAAGATTTCCTTGGTCTTGAGAAGAATACCAAGAAGAACTTCTTGTCATGGAGAATCCCATCCACATCTCTTGTGGAAGATAATATCCTTGGCAGAGAATGGGACCAGCAGGAAATAGTCAAGATGTTAAATGGTAAGAGAGAACTTAAATTGTCTGTGATCCCTATTGTGGGCATAGGTGGGGTTGGTAAAACAACTTTAGCACAATGGGTGTACAATAATGAGCACTTGATGGAGGGGTTTCATGTCAAAGAATGGGTTTGCATCTCTGAAGACTTCAACATTGTTGAGGTTACAAAGAAAATTATAGGCAACACTGCTTGTGATACAGAAGATTTCAATTCACTACAACTTAAGTTGAAGGAAAATTTGTTAGAGAAGAAGTTTTTTATTGTTTTGGATGATGTTTGGAGTGATGATGCTGATGTCTGGAAGAGATTTAAAACCCCTTTTCAATATGGGGCCAAGGGAAGTTCAATTCTTGTAACAACTCGTGTTATAGAGGTTGCCTCCATCGTCCAAACTTGTCCTCCTTACATTCTCAGTGAGTTGTCTGAAAATTGTTGTTGGTCAGTGTTTGCAAACAATGCTTGTTTTCTAGAATCAAATGGCGATTCAGCACTAGAAGAAATTGGCAAAAAGATTGTCAACAAGTGTAAGGGATTGCCATTAGCGGTAGAAACACTTGGCCGCATGTTGCGAGCAAAGCATGATGTTAAGGAATGGAAAGCTTTATTGGAAAGTGATATTTGGGAGTTTTCTGTGAAAAATACTAAAATCACTCCAGCATTGTTAATTAGTTACTTCCAACTTGTTCCACATTTAAAGCATTGTTTTGTTTATTGTTCATTGGTGGTGAGTGTTTTGAAGAATTAG 1275 0.4055 MAGALVGGAFLFGFINVVLDRFLSSEAANLVIGKKLGPDLVERLRISLHAAEALVDDTEYKQLDNPSVRDWLNSLKDAVYVADDLLDVVFTKAASTQKEVRSFWPIVSFLNRDRDMVAKMEGVVRRIEYLEKQKDFLGLEKNTKKNFLSWRIPSTSLVEDNILGREWDQQEIVKMLNGKRELKLSVIPIVGIGGVGKTTLAQWVYNNEHLMEGFHVKEWVCISEDFNIVEVTKKIIGNTACDTEDFNSLQLKLKENLLEKKFFIVLDDVWSDDADVWKRFKTPFQYGAKGSSILVTTRVIEVASIVQTCPPYILSELSENCCWSVFANNACFLESNGDSALEEIGKKIVNKCKGLPLAVETLGRMLRAKHDVKEWKALLESDIWEFSVKNTKITPALLISYFQLVPHLKHCFVYCSLVVSVLKN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc87g00003 424 Gene3D - 140 310 IPR027417 -
Stsc87g00003 424 Pfam Rx N-terminal domain 22 102 IPR041118 -
Stsc87g00003 424 PANTHER DISEASE RESISTANCE PROTEIN RP 71 417 IPR044974 GO:0006952
Stsc87g00003 424 Gene3D - 316 404 IPR042197 -
Stsc87g00003 424 Gene3D - 16 128 - -
Stsc87g00003 424 Pfam NB-ARC domain 169 380 IPR002182 GO:0043531
Stsc87g00003 424 PRINTS Disease resistance protein signature 256 270 - -
Stsc87g00003 424 PRINTS Disease resistance protein signature 352 366 - -
Stsc87g00003 424 PRINTS Disease resistance protein signature 186 201 - -
Stsc87g00003 424 FunFam Probable disease resistance protein At1g61300 149 309 - -
Stsc87g00003 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc87g00003 Stsc-Chr87 14319 15593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc87g00003 171 376 WRKY Transcription Factor Family AT5G45050 28.037 1.62e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc87g00003 - - ahf:112732585 629.017