Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc878g00006 ATGGGTCGCTCAGGAGATTGTAATGTAGTGACGCGGAAGGAGAATCGGAGGAAAGAAGATAACAAGGTTGATCAAGTATCCCACAGGGATGAACTTGGTGTCAATGCAGATCATGCTGATTCTCATTCTATTCTCTGGTTTGAATCCAGAAAAGAGATATTCGATAAAATTATGGAATCATTTCAAGATGATAACATCCCAGGTGTTGTGTTGCTTGGCATGGGTGGATCAGGAAAGACAACATTTGCAAAACAACTGGGTAGAAGAGCGTACGACTTTAAAATGTTCAAGCTTGTTGTATTTGTTCCTGCGGGAGAGAGACGCATGCCTTATGTTGAAAAGTTCATTCAAGGTAGCATAGCTAAACAGTTAGGTGTGATGACATCGAGAGAAGATGATTCAAACTTGATAGGAAGCCAAATACGGCAGAGATTAAGCCAACATCAACCTGTTCTTGTAATTTTGGATAATTTATGGGCACCGGTCAAGCTGGAAGAGATAGGAATTTGGAACGGCCATAGTCGAACGTGTTGTAAAGTTCTCATAACTTCGCGTTTGCAAAATGTTGGCCATAAGATGGGGATTAAGAGTGAATTTCCTGTCTATCTATTAACAGTTTCGGAAGCTTTTGATTTGTTCCGGAAGCGTGCAGGCCTTGTTCATGGATCTCCTAATGACATAACTGACATAGCAATGGAAATTGCAAAGTGCTGTCATGGATTACCCATCGCAATTTCAGTGGTGGCATCGGCTTTAAGAGGAAAAAACATTGACCACTGGCAGCAAGCATTGACAAAACTTAAAGAAATGGATTATTATGAACCTGACATGATAATGGAATTATATTTAGGCGCTGATATTGTACTGAGCAATAACTTACGAGCCAAAACCCTGTTCTCAATATGCGGTTTGTTTCCAACAGATCAAGAGATTGACATTCAAGATCTGTCCCTATTTGCAGTTAAACTAGGCCTATGCAGCAAAAATGAAGCGATCGCAGCCATGAACACTCTCAAGGATTCTAGCTTGCTAATGCAAGCTGGTGGAAGTTCAGACCGTGTCATAATGCATGATTTGATTCGTGACATGGCTGTAAGTTTAGTTCATAAGGAGAACCCTAACTATAAAGACAGCATTGAGGAGTACATTAGTGCACTTGATGATGAAGACGAAGATTTTCAGTGGAAACAGGAATTACAAGTTCTTCTCATCCAATTGTATGGTGTAACTGAGTACAATCCTTCTTCTTCTTCGTCATTTTCAGGGGATCCTGGGCTCCAAATTGTGTCCTCCAATCCTTACATTGTATCATCCGGAGCTGCTACAATTCCTAAACCATCTGGGAAATTGGTGAATTTCAAACAAGGAGGGTGTGTGGTTGACAAATCATTCCTACCTCTGCTCAAACAAGCATGTAAGGAGAATCCTCAGCTGATAGAATGCCAAAGAATGCACTCTGAAATTTTGAGGCAAACTGCATTTGATAACTTAGGCAAGTTGTTGTTTCTACTCCGTAATGTTATGCTCAAGGATTGGGTGCATCACAAGCAAGAGCTGCAAATATTTTGGGAGCAGACACTGTCCATGAAGTTTGATCTGGATTGGTTGAGACCTACCATTAACCGAATCTCCTCTTCGCCCGAGTTTGAGAGGATTGAAGCGCTACGAGAGGAAGAGAGGAGGTTGAATGAAGAAGCTGCTAAGCTGCGTCAGATGCTGGAGGTTGTTGAGAATAAAGCTGCAGTTATCAGAATTGATATTGAAAGAGAAGAGTCCATGTTGAATGGTTTTGCAATTGCTCATGTTCCAAGTGCTCATCCTAAAGCCAACACTTCTCTTTTTAGGAAGATTTTCCCTAGAAAATGA 1866 0.411 MGRSGDCNVVTRKENRRKEDNKVDQVSHRDELGVNADHADSHSILWFESRKEIFDKIMESFQDDNIPGVVLLGMGGSGKTTFAKQLGRRAYDFKMFKLVVFVPAGERRMPYVEKFIQGSIAKQLGVMTSREDDSNLIGSQIRQRLSQHQPVLVILDNLWAPVKLEEIGIWNGHSRTCCKVLITSRLQNVGHKMGIKSEFPVYLLTVSEAFDLFRKRAGLVHGSPNDITDIAMEIAKCCHGLPIAISVVASALRGKNIDHWQQALTKLKEMDYYEPDMIMELYLGADIVLSNNLRAKTLFSICGLFPTDQEIDIQDLSLFAVKLGLCSKNEAIAAMNTLKDSSLLMQAGGSSDRVIMHDLIRDMAVSLVHKENPNYKDSIEEYISALDDEDEDFQWKQELQVLLIQLYGVTEYNPSSSSSFSGDPGLQIVSSNPYIVSSGAATIPKPSGKLVNFKQGGCVVDKSFLPLLKQACKENPQLIECQRMHSEILRQTAFDNLGKLLFLLRNVMLKDWVHHKQELQIFWEQTLSMKFDLDWLRPTINRISSSPEFERIEALREEERRLNEEAAKLRQMLEVVENKAAVIRIDIEREESMLNGFAIAHVPSAHPKANTSLFRKIFPRK 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc878g00006 621 PRINTS Disease resistance protein signature 68 83 - -
Stsc878g00006 621 PRINTS Disease resistance protein signature 145 159 - -
Stsc878g00006 621 PRINTS Disease resistance protein signature 238 252 - -
Stsc878g00006 621 Gene3D - 40 201 IPR027417 -
Stsc878g00006 621 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 7 544 - -
Stsc878g00006 621 Pfam NB-ARC domain 54 270 IPR002182 GO:0043531
Stsc878g00006 621 MobiDBLite consensus disorder prediction 9 25 - -
Stsc878g00006 621 Gene3D - 204 281 IPR042197 -
Stsc878g00006 621 Gene3D - 288 366 IPR036388 -
Stsc878g00006 621 Coils Coil 552 579 - -
Stsc878g00006 621 MobiDBLite consensus disorder prediction 1 25 - -
Stsc878g00006 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 273 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc878g00006 Stsc-Chr878 16578 19314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc878g00006 50 371 WRKY Transcription Factor Family AT5G45050 24.926 7.27e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc878g00006 - - aip:107606510 472.626