Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc877g00002 ATGGATAGCAGCCGTCGCCATGAAAATGGTAGGCATGACATGGACTACTACAGAGGAGCACATTCCCTGTGGAATGTGGATTCCCAGTATCAAGTAAAGGAGCCAAATGCACTAGTCATGAATAAAAAAATAAGGTCTATCATGGCTGAAAGGCAGGCTGCCATTCTAGAACTTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGTGATTTAGCCCTTAGACAGAGGGATGAAGCACTTGCTCAAAGGGATAATGCCCTAATGGAACGGGATAACGCCCTTACAGCACTTCAAAATCAGAACAGTTTCAAGTCAGGTGATGGAGCTCAACATGGATCAAAGCGGATGCGCCGAACTGCATGCAGCCCAAAGGATATACCCAGAAGGGATGCTTCTCCAATGATGGCTAAAGATTCTGAAGCTGTCAAATCTCATCAAGCTAAGAGAATGAAGGACGACAATGTAATTAATTGTAAGGTATCAAAGCTGCCTAGCAAAGCAAAGAAAATGGGTGAGGATTTGAATAGGCAGGCAGCTTCTGAAGGGATAAAGATCAAATCTGAATGGGATAGGCAGGATGTTGGCTTGAATTTGGTTNNNNNNNNNNGCGACCATGCCAGTCCCGGTATGCACATGCACTGGAGTACCCCGGCAGTGCTACAAATGGGGGAATGGTGGATGGCAGTCATCTTGTTGTACCACGACATTGTCCATGTATCCACTGCCACAGCTTCCGAACAAGCGCCACGCCCGCATTGGGGGCCGAAAGATGAGTGGGAGTGTCTTCACAAGACTGCTCAGTAG 819 0.4652 MDSSRRHENGRHDMDYYRGAHSLWNVDSQYQVKEPNALVMNKKIRSIMAERQAAILELELEAAISEKNEALAARDLALRQRDEALAQRDNALMERDNALTALQNQNSFKSGDGAQHGSKRMRRTACSPKDIPRRDASPMMAKDSEAVKSHQAKRMKDDNVINCKVSKLPSKAKKMGEDLNRQAASEGIKIKSEWDRQDVGLNLVXXXXDHASPGMHMHWSTPAVLQMGEWWMAVILLYHDIVHVSTATASEQAPRPHWGPKDEWECLHKTAQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc877g00002 272 SMART GAGA_bind_2 1 205 IPR010409 -
Stsc877g00002 272 Pfam GAGA binding protein-like family 22 205 IPR010409 -
Stsc877g00002 272 PANTHER - 21 205 IPR010409 -
Stsc877g00002 272 Coils Coil 53 73 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc877g00002 1 230 BBR or BPC Transcription factor family AT2G21240 41.631 6.21e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Stsc877g00002 GAGA_bind 7.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc877g00002 - - gmx:100813103 263.848