Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc877g00001 ATGAAAGTAACAGAATCCGAAGGGGAGACGGAGGGGGTGAGCGTGAGGGACTGCATTCAACTAATTTCGACGCTGCTGACCCAAATCCCATCCATGGAGAGCTTCAAGGGAAAGTGGTCACTCATCGCAGCCACACTCACAAACCTTCAAACCCACCTCTCTGACTCCGACTTCCCAGCATCAAACCCACTCTCCATCGATCTCCTCCGTTCTCTCTCACAAACCCTCCAACACGCTCTCTCACTCGCACAACATTGCCACTCCCCCAACCCCCCCAACGGCAAGCTCAAGACACAGAGCGACCTCCATTCCCTGCTCGACAACCTCAACCGCCACCTCCACGACTCCACCATCCTCTCCCGCACCCATACCGACAACGCCGCCGCCCTCTTCACCAACCCCCGCGACTCTCTCAGATCCCAATCCAGGGACCTCATCACCCGCCTCCAAATCGGCACACCCGACTCACGAAACTCCGCCATGGACTCCTTGCTTTCTCTTCTTCATCAGGACGACAAGAACGTCGTCATCGCGGTTGCGCAGGGCGTCGTCCCAGTTCTAGTCCGCACACTCGATCACTCCACCTCCTCTGAGCCAAAGGAAAAAGCCGTGGCCGCCATCGCCAGAATCTCAACCGTAGACACCAGCAAGCCCGTCCTCGCCGCCGAGGGCTTGCTCCTCCTCAACCACCTCCTACGAGTCCTCGATTCCGGAAGCGGGTTCGCCAAGGAGAAAGCCTGCATAGCGCTTCAGGCGCTGAGTTACTCGAAGGAGAACGCCAGGGCCATAGGCTCACGCGGCGGAATCTCGTCTCTCTTGGAGATCTGCCAAGCTGGCACCCCCGGTTCTCAAGCCTCCGCCGCCGGCGTTCTCAGGAATTTATCGCGGTTCGCCGAGATCAAGGAGAATCTCGTAGAAGAAAACGCTGTTTTCGTCCTCTTGGGTCTCGCTTCTTCCGGAACTGCGTTGGCGCAAGAGAATGCCATCGCCTGCCTCTGTGGTTTAATATCTGATGACCAAAGCTTGAAGCTTTCGGTGGTTAGGGAAGGTGGGCTGGAGACATTGAAGAATTTCTGGGAGTCGGGTCGGAGCCCCGAAGTGGTAATTGATTTTCTGGGTCACCTGGCTTCGTGTTCGCGCGTGGCTGACGTTGTTGTCTCCGATGGGTTTGTCGTGCCGCACTTGGTGGGAGCTTTGGGGTCCGGGGTCATGGCGGTTAGAGTTGCAGCAGGTAGAGCCGTATATGGTATGTGTTTGGAGAGCGCAAAAGCGAGGAAGGAGTTGGGTGAGTGCGGCGGCGTTAGCCCCCTGATAAAGATGCTGGTGGATGGGAAGAGCGCGGAGGAGAAGGAGGCGGGTGCGAAAGCATTGTCGGTGATGCTGATGCATGCAGGGAATCGGAGAGTGTTTCGGAAGGACGAGAGAGGGATAGTGAGTGCGGTTCAGCTGTTGAACCCTTCGGTGGTGGGTTTGGATAAGAGGTACCCGGTGGCTTTGCTGGAATTGCTGGTTCATTCAAAGAAGTGTAAGAAGCAGATGGTTGCCGCTGGTGCTTGTGTTTACACTCAGAAGCTTGTGGAAATGGAAGTCCATGGTGCCAAGAAGCTTTTAGAAAGCCTTGGTCGTGCCAAGATTTGGGGTGTTTTTGCCAGACCCTAA 1659 0.5618 MKVTESEGETEGVSVRDCIQLISTLLTQIPSMESFKGKWSLIAATLTNLQTHLSDSDFPASNPLSIDLLRSLSQTLQHALSLAQHCHSPNPPNGKLKTQSDLHSLLDNLNRHLHDSTILSRTHTDNAAALFTNPRDSLRSQSRDLITRLQIGTPDSRNSAMDSLLSLLHQDDKNVVIAVAQGVVPVLVRTLDHSTSSEPKEKAVAAIARISTVDTSKPVLAAEGLLLLNHLLRVLDSGSGFAKEKACIALQALSYSKENARAIGSRGGISSLLEICQAGTPGSQASAAGVLRNLSRFAEIKENLVEENAVFVLLGLASSGTALAQENAIACLCGLISDDQSLKLSVVREGGLETLKNFWESGRSPEVVIDFLGHLASCSRVADVVVSDGFVVPHLVGALGSGVMAVRVAAGRAVYGMCLESAKARKELGECGGVSPLIKMLVDGKSAEEKEAGAKALSVMLMHAGNRRVFRKDERGIVSAVQLLNPSVVGLDKRYPVALLELLVHSKKCKKQMVAAGACVYTQKLVEMEVHGAKKLLESLGRAKIWGVFARP 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc877g00001 552 Gene3D - 133 364 IPR011989 -
Stsc877g00001 552 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 17 550 - -
Stsc877g00001 552 SUPERFAMILY ARM repeat 144 527 IPR016024 -
Stsc877g00001 552 SMART arm_5 171 212 IPR000225 GO:0005515
Stsc877g00001 552 SMART arm_5 256 296 IPR000225 GO:0005515
Stsc877g00001 552 SMART arm_5 421 462 IPR000225 GO:0005515
Stsc877g00001 552 SMART arm_5 378 419 IPR000225 GO:0005515
Stsc877g00001 552 Gene3D - 365 541 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc877g00001 Stsc-Chr877 5566 7778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc877g00001 138 410 U-box Gene Family AT2G23140 30.435 5.65e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc877g00001 - - qsa:O6P43_030678 627.091