Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc864g00003 ATGGCTGGTAGTGGCACAGTTCCAATACTTGATTTCATTCCTGTTGGATTCAGGTTCAAACCAACAGATGAAGAGCTTGTGAGTTATTACCTCAATCACAAGCTCCTAAATGATAATTTCCCTATTCATCATATTATCCCAGACATTGATCTTTGCAAGGTTGAACCTTGGGACATACCAGCATTATCGATAATAAAATCGGATGATCCAGAATGGTTTTTCTTTAGTGGACGAGAATATAAGTATGGAAAGAGCAAAAGAGCAAACAGGGCTACCAAAGATGGGTATTGGAAAGCCACTGGACAAGACAGGTACATAAAGGAAAGGGCCACTAACAAAATTATTGGAAGCAAGAAGACACTTGTTTTCTACAAAGGTCGGGTTCCTGCTGGTGCCAAAACCAATTGGGTTATCCATGAGTATCACGCTACTACCTTTGATGATAGCCAGAGGAATTTTGTTTTGTGTCGTTTAATGAAGAAAGTTGAGAAAAAATGTGAAGAGGGAACTGATGCACAAGCTTGTGATAAAGGGGAACCTAGCACTCACATGGAAGAAGCAGATGAGAGAGTCTCAAATATGCTTGATTTGCAAGATGTGAACATGGATTCGATCTTCCACGCACTGCCTCGAGCCGGATCATCATCACAGCATTCACCAATCAGCATTGAACAGCAAGAGTCCTTCCCAGTCTCCCCATTTGTGAATGAAGATAACATGATGCATATTCAATTTGAAACTGATGGAGAGAAGCAAGATGCAGAGGAGTTTGTGGATTCGATTTGGAGTGATGGCGATTTAGCTACTTGGGAAGAAAGACAGCAGCAACATGCTTTCTTAAACAATCAAATCTGCTTGGTTTCGTCGATGAGGGTATGCTACGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTAGACAGTTAACAACACATCAGTGCATCAAGTGGAGAAAAGGGCAGGGAATGGAGGCAAAGAAAACACTTCAAAACCAATATTTTGTTTTGAGCCCTTTCAAGAATTGA 1023 0.4115 MAGSGTVPILDFIPVGFRFKPTDEELVSYYLNHKLLNDNFPIHHIIPDIDLCKVEPWDIPALSIIKSDDPEWFFFSGREYKYGKSKRANRATKDGYWKATGQDRYIKERATNKIIGSKKTLVFYKGRVPAGAKTNWVIHEYHATTFDDSQRNFVLCRLMKKVEKKCEEGTDAQACDKGEPSTHMEEADERVSNMLDLQDVNMDSIFHALPRAGSSSQHSPISIEQQESFPVSPFVNEDNMMHIQFETDGEKQDAEEFVDSIWSDGDLATWEERQQQHAFLNNQICLVSSMRVCYESSDTDAEVVSRQLTTHQCIKWRKGQGMEAKKTLQNQYFVLSPFKN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc864g00003 340 ProSiteProfiles NAC domain profile. 13 161 IPR003441 GO:0003677|GO:0006355
Stsc864g00003 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 241 - -
Stsc864g00003 340 SUPERFAMILY NAC domain 12 161 IPR036093 GO:0003677|GO:0006355
Stsc864g00003 340 Gene3D NAC domain 22 166 IPR036093 GO:0003677|GO:0006355
Stsc864g00003 340 Pfam No apical meristem (NAM) protein 14 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc864g00003 Stsc-Chr864 3649 6796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc864g00003 10 166 NAC Transcription Factor Family AT4G35580 54.938 3.10e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc864g00003 NAM 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc864g00003 - - adu:107473112 503.056