Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc864g00001 ATGGCTGGTAGTGGCACAGTTCCAATACTTGATTTCATTCCTGTTGGATTCAGGTTCAAACCAACAGATGAAGAGCTTGTGAGTTATTACCTCAATCACAAGCTCCTAAATGATAATTTCCCTATTCATCATATTATCCCAGACATTGATCTTTGCAAGGTTGAACCTTGGGACATACCAGCATTATCGATAATAAAATCGGATGATCCAGAATGGTTTTTCTTTAGTGGACGAGAATATAAGTATGGAAAGAGCAAAAGAGCAAACAGGGCTACCAAAGATGGGTATTGGAAAGCCACTGGACAAGACAGGTACATAAAGGAAAGGGCCACTAACAAAATTATTGGAAGCAAGAAGACACTTGTTTTCTACAAAGGTCGGGTTCCTGCTGGTGCCAAAACCAATTGGGTTATCCATGAGTATCACGCTACTACCTTTGATGATAGCCAGAGGAATTTTGTTTTGTGTCGTTTAATGAAGAAAGTTGAGAAAAAATGTGAAGAGGGAACTGATGCACAAGCTTGTGATAAAGGGGAACCTAGCACTCACATGGAAGAAGCAGATGAGAGAGTCTCAAATATGCTTGATTTGCAAGATGTGAACATGGATTCGATCTTCCACGCACTGCCTCGAGCCGGATCATCATCACAGCATTCACCAATCAGCATTGAACAGCAAGAGTCCTTCCCAGTCTCCCCATTTGTGAATGAAGATAACATGATGCATATTCAATTTGAAACTGATGGAGAGAAGCAAGATGCAGAGGAGTTTGTGGATTCGATTTGGAGTGATGGCGATTTAGCTACTTGGGAAGAAAGACAGCAGCAACATGCTTTCTTAAACAATCAAATCTGCTTGGTTTCGTCGATGAGGGTATGCTACGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTAGACAGGCTAGTTCAAGAGAATTCCATGTAGCAAAAATGGTTCAACCATCACATACAGAAAAAACTGGAAGTATCTATCAAGAAGACTTTTGGGGAGTGGATTCATCTTCATGTGACTCCAATGCAGATAAAGCTTTTGAGATAAACTCTATTGAAATTTCTAGTCCTTCTTCTTCTTCGGCTCAAAGTAGATCGAAAAATCAATATAACCCGAGACGATCTCAAACACATAGGAAGGTTTCAAGCAATGCAATGTCCAATCTTGAGGATAATAAGAAACTGACCAATGTGGAACAATCAAGAAGAGATCAAGAAAAAGCCCGGAAAACTCGAAGTTCAGGAAAGAACTTAGAAACCAGAAGCTCTGATGTTAACAGAATTGGTTGTTTCCTCCGCCTCGAAACATCTTCGTCGAGCGAAAGCCTATCGCCTCGCGCGGTATATCTTGTTAATGTAGTTATAGGGATCTTGTTGCTTCTAGCCATTAGTTTTGATGTGTTATCTTGTTACAGATAA 1431 0.4046 MAGSGTVPILDFIPVGFRFKPTDEELVSYYLNHKLLNDNFPIHHIIPDIDLCKVEPWDIPALSIIKSDDPEWFFFSGREYKYGKSKRANRATKDGYWKATGQDRYIKERATNKIIGSKKTLVFYKGRVPAGAKTNWVIHEYHATTFDDSQRNFVLCRLMKKVEKKCEEGTDAQACDKGEPSTHMEEADERVSNMLDLQDVNMDSIFHALPRAGSSSQHSPISIEQQESFPVSPFVNEDNMMHIQFETDGEKQDAEEFVDSIWSDGDLATWEERQQQHAFLNNQICLVSSMRVCYESSDTDAEVVSRQASSREFHVAKMVQPSHTEKTGSIYQEDFWGVDSSSCDSNADKAFEINSIEISSPSSSSAQSRSKNQYNPRRSQTHRKVSSNAMSNLEDNKKLTNVEQSRRDQEKARKTRSSGKNLETRSSDVNRIGCFLRLETSSSSESLSPRAVYLVNVVIGILLLLAISFDVLSCYR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc864g00001 476 Gene3D NAC domain 22 166 IPR036093 GO:0003677|GO:0006355
Stsc864g00001 476 ProSiteProfiles NAC domain profile. 13 161 IPR003441 GO:0003677|GO:0006355
Stsc864g00001 476 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 363 - -
Stsc864g00001 476 MobiDBLite consensus disorder prediction 358 398 - -
Stsc864g00001 476 SUPERFAMILY NAC domain 12 161 IPR036093 GO:0003677|GO:0006355
Stsc864g00001 476 MobiDBLite consensus disorder prediction 358 424 - -
Stsc864g00001 476 MobiDBLite consensus disorder prediction 399 421 - -
Stsc864g00001 476 Pfam No apical meristem (NAM) protein 14 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc864g00001 Stsc-Chr864 3649 6796 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc864g00001 10 166 NAC Transcription Factor Family AT4G35580 54.938 1.11e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc864g00001 NAM 2.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc864g00001 - - adu:107473112 701.434