Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc863g00001 ATGAAACCATCAAGTGCCATGGAAGAAGAAGAAGAAGAAGAAGAGGAGCAGCAAGAAATGATGATGGACACAAAGGAGAATCATAAGAAGAATGAAGGAGGGGTTGGTGTTGGAAGGTCAGATTCAATGTCAGATTGCAGTGAACAGAATGAAGAAGAGGAAGAGACAAAATACAGAAGGAGGAATGGGAAGGGGAGCCAATCAAAGAACCTTTTTGCAGAAAGGAAGAGGAGGAAGAAACTGAATGACAGGCTGTACCATCTTCGATCATTGGTTCCAAGGATATCAAAGCTTGATAGAGCTTCAATTCTTGGTGATGCAATTGAGTTTGTGAAGGACTTGCAGAAGCAGGTGAAGGATCTTCAGGATGAACTTGAGGACAATAATTCATCAGTCATTACTGCTGCTGATAGTGTCAACCAGTTTCTTGATCATAATCATCATTTGGGAGCATCATATGTTATCCCAAAGCAGAAGCAGGAAGCAGCAGTGGATGGCAGTGCTGTTACCATGGACAACAAGCACACCCAACAGATGGAGCCGCAAGTGGAAGTGGCAGTGATAGATGGAAAGGAATACTTTGTGAAGGTATTCTGTGAGCACAGAGCTGGTGGGTTTGTGAAATTAATGGAGGCACTCAACACATTAGGCATGGATGTCGTGCATGCCACTGTCACCAGCCACAAAGGCCTTGTCTCCAACGTCTTCAAAGTTGAGAAAAAGGACAGTGATATGGTGGAGGCTGAGGATGTGAGAGACTCGTTGCTAGAGCTCACGAGAAGCCCATCATGTAGTAGGGGTGTGTGGACTAACAAGAATAATAAGAATAATAACAATGCAACATTGGAGAATAATGGTCATCACAATCACAATCACAATCACAATCACAATCACAATCAGAACCACCAGATGGGTGCATATCACCCCCACCCATTTCATACTTAA 945 0.4349 MKPSSAMEEEEEEEEEQQEMMMDTKENHKKNEGGVGVGRSDSMSDCSEQNEEEEETKYRRRNGKGSQSKNLFAERKRRKKLNDRLYHLRSLVPRISKLDRASILGDAIEFVKDLQKQVKDLQDELEDNNSSVITAADSVNQFLDHNHHLGASYVIPKQKQEAAVDGSAVTMDNKHTQQMEPQVEVAVIDGKEYFVKVFCEHRAGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSDMVEAEDVRDSLLELTRSPSCSRGVWTNKNNKNNNNATLENNGHHNHNHNHNHNHNQNHQMGAYHPHPFHT 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc863g00001 314 Coils Coil 104 131 - -
Stsc863g00001 314 MobiDBLite consensus disorder prediction 21 35 - -
Stsc863g00001 314 Gene3D - 49 130 IPR036638 GO:0046983
Stsc863g00001 314 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 30 259 - -
Stsc863g00001 314 Pfam Helix-loop-helix DNA-binding domain 73 115 IPR011598 GO:0046983
Stsc863g00001 314 CDD ACT_UUR-ACR-like 195 258 - -
Stsc863g00001 314 MobiDBLite consensus disorder prediction 264 314 - -
Stsc863g00001 314 MobiDBLite consensus disorder prediction 1 76 - -
Stsc863g00001 314 CDD bHLH_AtAMS_like 68 131 - -
Stsc863g00001 314 SMART finulus 71 120 IPR011598 GO:0046983
Stsc863g00001 314 Coils Coil 7 27 - -
Stsc863g00001 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Stsc863g00001 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 127 IPR036638 GO:0046983
Stsc863g00001 314 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc863g00001 Stsc-Chr863 5788 7625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc863g00001 38 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 55.649 4.29e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc863g00001 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc863g00001 - - aip:107616200 407.912