Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc862g00002 ATGACGCGGCGATGCTCGCATTGCAGCCACAATGGCCATAACTCGAGGACCTGCCCGAACCGCGGCGTCAAGCTCTTCGGGGTCCGATTAACCGATGGCTCGATCCGGAAGAGCGCTAGCATGGGGAATCTCACCCACTACGCCGGTTCAGGTTCCGGTTCTGGTCCTCTCCACGCTTCTGGTTCAAATAACCCCGGTTCGCCCGGTGATAACCACGATAACGCTGCTGCCGCTGACGGTTACGCTTCCGAGGACTTCGTTCCTGGCTCCTCTTCTAGCTCCCGTGAAAGAAAGAAGGGGGTTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTACAAAAGTTGGGCAAAGGTGATTGGCGCGGAATTGCAAGGAACTATGTTAAATCAAGGACACCTACTCAAGTGGCCAGTCACGCTCAAAAGTATTTCATTAGGCAAAGCAATGTGTCTAGACGGAAAAGACGCTCCAGCTTGTTTGACATTGTTGCAGATGAAGCAGCTGATGATACTCCAATGGTACAGCAAGATTTCTTGTCAGTTAACCAGGTACAGGCTGAAACAGAAGGCAATAACCCCTTGCCTGCTGTTCCCACCCTCGACGAAGAGTGTGAATCCATGGATTCCACCAACTCCAATGACAGGGATTCTGGGTCTATGCCCGAAAACTCGCAACCACCACAACAACAACCACCATCTTATCCAGTGCTATATCCTGCATATTATTCTCCATTCTTCCCATTTCCTCTGCCTTATTGGTCAGGGTACAGTCCAGAGCCTAATACTGTAAAGGAGGAGACACACGAGGTGCTGAAGCCAACTGCAGTGCATTCCAAAGCACCGATCAATGTCGACGAACTCGTTGGCATGTCGAAACTGAGCTTGGGAGAGACTATTGCAGACTCAGGCCCCTCCTCTCTGTCCTTGAAGCTTCAAGAAGAAGGGCCATCTCGGCAGTCAGCGTTTCATGCGACCCCGACATGTGGCAGTTCGAATATGAATGAGAGTGCCATACATGCAGTTTAA 1035 0.5063 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGSGPLHASGSNNPGSPGDNHDNAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVKSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAADDTPMVQQDFLSVNQVQAETEGNNPLPAVPTLDEECESMDSTNSNDRDSGSMPENSQPPQQQPPSYPVLYPAYYSPFFPFPLPYWSGYSPEPNTVKEETHEVLKPTAVHSKAPINVDELVGMSKLSLGETIADSGPSSLSLKLQEEGPSRQSAFHATPTCGSSNMNESAIHAV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc862g00002 344 MobiDBLite consensus disorder prediction 46 70 - -
Stsc862g00002 344 MobiDBLite consensus disorder prediction 46 104 - -
Stsc862g00002 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Stsc862g00002 344 CDD SANT 102 147 IPR001005 -
Stsc862g00002 344 Gene3D - 101 153 - -
Stsc862g00002 344 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Stsc862g00002 344 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Stsc862g00002 344 SMART sant 99 149 IPR001005 -
Stsc862g00002 344 MobiDBLite consensus disorder prediction 322 344 - -
Stsc862g00002 344 MobiDBLite consensus disorder prediction 1 21 - -
Stsc862g00002 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Stsc862g00002 344 ProSiteProfiles SANT domain profile. 103 151 IPR017884 -
Stsc862g00002 344 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Stsc862g00002 344 PANTHER TRANSCRIPTION FACTOR KUA1 3 282 - -
Stsc862g00002 344 MobiDBLite consensus disorder prediction 188 237 - -
Stsc862g00002 344 FunFam transcription factor MYB1R1 101 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc862g00002 Stsc-Chr862 15256 22290 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc862g00002 Myb_DNA-binding 5.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc862g00002 - - ccaj:109807943 557.37