Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc85g00020 ATGTGTCTTCACATACATCATCATCACCATTCAGCAAAGCCTTATAATAGAACAATGGCGAAAGAGGGAGTTGTTGGTTCGAAAGGTTCAGTTGACTTTGAGTATGCGAAGCAGATAGAGAAGGCGCGTCGCGAATTACGCGCTCTTATCTCCTCCAGGAACTGCGCTCCTCTCATGCTCCGATTAGCATGGCACGATGCTGGTACCTATGATGCAAAGACAAGAACAGGAGGTGCCAATGGTTCTATCAGGAACCAACAAGAGTTGAACCACGAAGCAAACAGGGGCTTGGAAACAGCTGTTCAATTCTGTGAGGAAGTGAAGGGAAAATGTCCTAGAATTTCATATGCTGATCTTTATCAGCTAGCTGGTGTTATTGCAGTAGAAGTAACCGGGGGTCCAACAATTCAGTTTGTTCCTGGCAGAAAGGATTCACTGCAATCTCCACCAGAAGGGCGCCTCCCTGATGCTAAACAAGGTGCAAAGCATTTAAGGGATGTGTTTTATCGCATGGGTCTCACTGATAAAGACATCGTCGTTTTATCTGGAGGCCACACTTTGGGTAAAGCTCATAAAGATCGCTCAGGCTTTGAAGGCCAATGGACTAAGAACCATTTGAAGTTTGATAACTCCTATTTTGTGGAGCTAATGGATTCAAAAGACTCATTCAAGCTTCCAACTGACAAGGTTCTGGTTGAGGATCCTGAGTTCCGCAAGTATGTTGAACTCTACAAAAATGATGAGGATGCTTTTTTCGCAGATTATGCAGTGTCACACAAGAAGCTCTCAGAGCTGGGCTTCAATCCAAATCGTCCTTCAGATAGCCGGATTGTCCATGGAGTTATAGGCTTTCTAGTTGCCTCAACTGTCGTCGTCTTGGGTTACTTAATTGAATTCAACAGAAAAACCAAGTGA 915 0.4437 MCLHIHHHHHSAKPYNRTMAKEGVVGSKGSVDFEYAKQIEKARRELRALISSRNCAPLMLRLAWHDAGTYDAKTRTGGANGSIRNQQELNHEANRGLETAVQFCEEVKGKCPRISYADLYQLAGVIAVEVTGGPTIQFVPGRKDSLQSPPEGRLPDAKQGAKHLRDVFYRMGLTDKDIVVLSGGHTLGKAHKDRSGFEGQWTKNHLKFDNSYFVELMDSKDSFKLPTDKVLVEDPEFRKYVELYKNDEDAFFADYAVSHKKLSELGFNPNRPSDSRIVHGVIGFLVASTVVVLGYLIEFNRKTK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc85g00020 304 CDD ascorbate_peroxidase 34 270 - -
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 88 112 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 171 192 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 243 267 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 56 71 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 193 217 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 132 144 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 153 170 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 35 55 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 74 84 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Plant ascorbate peroxidase signature 113 131 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 ProSiteProfiles Plant heme peroxidase family profile. 56 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 SUPERFAMILY Heme-dependent peroxidases 34 280 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 Gene3D Peroxidase, domain 2 155 259 - -
Stsc85g00020 304 Pfam Peroxidase 43 247 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 ProSitePatterns Peroxidases proximal heme-ligand signature. 177 187 IPR019793 -
Stsc85g00020 304 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Stsc85g00020 304 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Haem peroxidase superfamily signature 201 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc85g00020 304 FunFam Cytosolic ascorbate peroxidase 42 159 - -
Stsc85g00020 304 Gene3D - 42 266 - -
Stsc85g00020 304 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 28 269 IPR044831 GO:0004601|GO:0034599
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc85g00020 Stsc-Chr85 100547 102233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc85g00020 60 266 Peroxidase AT4G17690 30.242 8.33e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc85g00020 K00434 - gmx:100806101 431.409