Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc85g00019 ATGGCAGAAGACAGATATGATGAAACCTGTTCTGAAGCTTCTTCTGCATGTTCCCAAATAGGAGCCAATAACTGCAACCATTTCTTTCATAGATTATGCTGTTCGGCACCTTCATGGAACTGGAACACCACCACCACCACCACCGTAACACCACCACCTCCACCTGGCAGAAGAATTTTCCATAGAGATGTTGAGAAAGAAGCATTCCAATATGCAAGTAGCAGCCATTGCCTCTCATCTTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGTGATGCTAGCAATCTTGATAGGGCTACTTACTATTCTAACATGGCATTTCACCAAGATTTACACAACAAAGTCACTGCAAACTTTGGCATATGATCTGCGTTATGAGCTTCTTCAACGCCCAATCTTGAGGATGTGGAACATTCTCAACTCCACCGCCGAGATCACCACGGCTCAGGTCAAGCTTTCGCAGTATGTCATCAGGCGTTACAGCAACCCTGCTAATCAAGCAGAGCAAGTTGAGCTATATGAAGCAATGAGGGCTATAACATGGGCATTGTTTTCTAGTAAAAAAGCTCTAAACTCAATAACCATCAATTATAAGAATGGTTTTGTCCAAGCTTTCCATAGAGATCTTAAGGACAACAACACATCTTACATCTATTCAGATCTCGTGAATTACTCTATGGTTGCTAGCAACTCTAATGAGATGAACTTCATTTCGGCTCATCAATCTTGGGACGATAAGGCCATTCATGGTAACAAATCTGCAATTTGGTATCGCGAGCCGCTTGATCCTGTCACTGGGGATAAGATTGGGAAGGCTATGCAGATTGCTCCGGAAGACTTGATCAACATAGCTGGTCTTTCACAAGTACCTGATGGTGTGGCGTCATGGCATGTTGCAGTGAGCAAGTTCACTGACTCGCCATTGCTTTCAGCAGCATTACCTGTTTGGGACTCTTCTAATAAGAGTATTATGGCAGTTGTAGGTGTCACAACCGCGCTTTATAGCGTAGGACAGCTGATGAAGGAGCTAGTTGAGATGCACAGTGGTCACATGTACTTGACATCACAAGAGGGTTACTTGCTTGCAACTTCTACAAATGCACCTCTGCTAACAAATTCAACAAAGTCTCCAAGGCTTAAGATGGCGGTTGATTGCGAAAATGAGGTGATCAAACTTGGTGCTGAGTGGTTGCAGAGAGCTTATGGGAACCATTCTCCTCCCAGTCATGAGGTTCATGTAGAAAATGCCAAGCTAGGCCACCAGCAATATTACATTGACTCTTTCTTCCTAAACTTGAAGAGACTTCCTTTGGTGGGTGTAATCATCATACCAAGAAATCATGAATTAAGGACACCGATGGCAGCAGTAATTGGGTTGCTTGACATTCTTATATCTGATGACTGTCTCACAAATGAACAATACTCAACTGTTACTCAAATAAGAAAATGCTCAACCGCGCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGCAAGGTGGAATCAGGAAAACTAGTCCTAGAAGAGGCAGAATTCGACTTGGGCCGTGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTGTCTGATGAAATGCCAAAGGTGGTAAGGGGTGATTCTGCTAGGGTGGTTCAGATTTTTGCAAATCTAATCAACAATTCAATAAAGTTTACTCCATCTGGTCACATTATTCTGCGAGGTTGGTGCGAATACCCAAATTCTTGCAATAGTAGTCCAATTTTTCCACTTGAACAGAAGAAATCACGGTGTATACAGAAGTCTAGAGAGAAGCAAAATGCAAACAATGTAAAGAGAACAACTAAGAGAGATAACAAAGTCATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGCATTGACCCAAGTAAATGGGATTCTGTCTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTCTGCATTGTCAGAAACTTGGTCAATAAGATGGGCGGAGAAATCAAGGTTGTCAGAAAGGAGGGCCAAGGAACACTGATGAGATTATGCTTAACCCTCAGTACACCTATTGATGTCACAGAGCAACATTGTGCATTGGATTTGACTGACAATAGCTTAGTGGTACTTCTTGCACTGCACGGCAACATGAGTCGCTTGATTACATCCAAGTGGTTACAGAAAAATGGGGTTTGCACTATAGAAGCATCTGAATGGAATGGACTAACACAAGTTTTGAGGGATCTCTTTCATTCAAGAAGTCCAGTCCATAATAACGATAATTTTGATGCACATTATCCAGCAACCGAGGGATTGAAGTCTAAATTACTCAACATACTAGACATGAAGAACCCGGTTTTCATCATTGTTGTTGACATTGGGCTACTTGACTTGAGCACAGACATATGGAAAGAACAGCTTAACTTCCTTCATAGATACTTTGGGAGAGCAAGGTTTGTGTGGATGCTGAATCATGACACATCCAATAACATAAAGATGGAGATTCGTCGGAAAGGGAATGTTTTGATGGTCAACAAACCCCTTTACAAAGCAAAAATGGTTCATATTTTAGAAGCAGTCATGAAGGAGAGAAATCTTGAGCTGCAAAAGAGAAATAATATGATTGGTTCAAGGGCGGCGGCAAAAGAGGGCGAGTTGTATGAATTTCTTGAGATTGATTCTACTCATTTTGATGTTGGTAGCTCTGATGATTCAGACACTTCTGAAACAGTTGGTTCTAATCCTGTTAGTGTCAATGGAGATAAACAACTTGAATTGGTGACAAGATCACCCCCATCATCAACATACAAGATCAATAACTCCTTAGTTGGATTAACCAATGAACATTTGGAAGATAACAATAATGCAAGGAAAGAAGAGTCATGTCAGAGTAGCCCCAGTTCTTCCAACCATGCCATTGAAGAAATTGAACCTAAATCACTGTCCACTAAAGAATCATCTCAAGGTGAAGATTCTGAACGTGGTGAAACACATAGGGCTGCTGGCCCAAATAATAATGCAGTCAATGGAAAGAATTCTCTTGAAGGCCTGAGGATACTGCTTGCAGAAGATACTCCTGTGCTTCAAAGGGTAGCAACCATAATGCTTGAGAAAATGGGAGCCTCTGTCGTTGCTGTAGGTGATGGACAACAAGCAGTTGATGCTCTCCATTGCATGCTCGGTGTTGAAGACTGCAGAAGGGATTCTCTCCAGAAGGATAGAAACACGAGATCACAAACAGAGATTTTGACTTCTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCAACAAAAGCAATAAGGAAATCAGAAGTGGGAACAGGATTGCATATTCCAATTGTTGCCCTCACAGCTCATGCAATGTCATGTGATGAAGCCAAATGCCTTGAAGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCAAATGGTGTCAACCATACTTTCACTCACCAAAAGAACAACATCATGA 3549 0.4193 MAEDRYDETCSEASSACSQIGANNCNHFFHRLCCSAPSWNWNTTTTTTVTPPPPPGRRIFHRDVEKEAFQYASSSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLQTLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRRYSNPANQAEQVELYEAMRAITWALFSSKKALNSITINYKNGFVQAFHRDLKDNNTSYIYSDLVNYSMVASNSNEMNFISAHQSWDDKAIHGNKSAIWYREPLDPVTGDKIGKAMQIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTALYSVGQLMKELVEMHSGHMYLTSQEGYLLATSTNAPLLTNSTKSPRLKMAVDCENEVIKLGAEWLQRAYGNHSPPSHEVHVENAKLGHQQYYIDSFFLNLKRLPLVGVIIIPRNHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDEMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCEYPNSCNSSPIFPLEQKKSRCIQKSREKQNANNVKRTTKRDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVVRKEGQGTLMRLCLTLSTPIDVTEQHCALDLTDNSLVVLLALHGNMSRLITSKWLQKNGVCTIEASEWNGLTQVLRDLFHSRSPVHNNDNFDAHYPATEGLKSKLLNILDMKNPVFIIVVDIGLLDLSTDIWKEQLNFLHRYFGRARFVWMLNHDTSNNIKMEIRRKGNVLMVNKPLYKAKMVHILEAVMKERNLELQKRNNMIGSRAAAKEGELYEFLEIDSTHFDVGSSDDSDTSETVGSNPVSVNGDKQLELVTRSPPSSTYKINNSLVGLTNEHLEDNNNARKEESCQSSPSSSNHAIEEIEPKSLSTKESSQGEDSERGETHRAAGPNNNAVNGKNSLEGLRILLAEDTPVLQRVATIMLEKMGASVVAVGDGQQAVDALHCMLGVEDCRRDSLQKDRNTRSQTEILTSPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKQMVSTILSLTKRTTS 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc85g00019 1182 MobiDBLite consensus disorder prediction 913 954 - -
Stsc85g00019 1182 CDD HisKA 449 501 IPR003661 GO:0000155|GO:0007165
Stsc85g00019 1182 PRINTS Bacterial sensor protein C-terminal signature 647 657 IPR004358 GO:0016310|GO:0016772
Stsc85g00019 1182 PRINTS Bacterial sensor protein C-terminal signature 664 682 IPR004358 GO:0016310|GO:0016772
Stsc85g00019 1182 PRINTS Bacterial sensor protein C-terminal signature 688 701 IPR004358 GO:0016310|GO:0016772
Stsc85g00019 1182 PRINTS Bacterial sensor protein C-terminal signature 629 643 IPR004358 GO:0016310|GO:0016772
Stsc85g00019 1182 SMART HKATPase_4 552 704 IPR003594 -
Stsc85g00019 1182 MobiDBLite consensus disorder prediction 919 954 - -
Stsc85g00019 1182 ProSiteProfiles Response regulatory domain profile. 1033 1177 IPR001789 GO:0000160
Stsc85g00019 1182 MobiDBLite consensus disorder prediction 974 991 - -
Stsc85g00019 1182 MobiDBLite consensus disorder prediction 992 1013 - -
Stsc85g00019 1182 SUPERFAMILY CheY-like 1030 1178 IPR011006 -
Stsc85g00019 1182 Pfam His Kinase A (phospho-acceptor) domain 449 505 IPR003661 GO:0000155|GO:0007165
Stsc85g00019 1182 PANTHER TWO-COMPONENT HISTIDINE KINASE 449 709 - -
Stsc85g00019 1182 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 552 702 IPR003594 -
Stsc85g00019 1182 Gene3D - 507 705 IPR036890 -
Stsc85g00019 1182 Gene3D - 1012 1180 - -
Stsc85g00019 1182 ProSiteProfiles Histidine kinase domain profile. 446 704 IPR005467 -
Stsc85g00019 1182 SMART HisKA_10 445 505 IPR003661 GO:0000155|GO:0007165
Stsc85g00019 1182 Pfam Response regulator receiver domain 1034 1173 IPR001789 GO:0000160
Stsc85g00019 1182 Gene3D - 444 506 - -
Stsc85g00019 1182 SMART REC_2 1032 1173 IPR001789 GO:0000160
Stsc85g00019 1182 MobiDBLite consensus disorder prediction 970 1026 - -
Stsc85g00019 1182 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 449 506 IPR036097 GO:0000155|GO:0007165
Stsc85g00019 1182 CDD REC_hyHK_CKI1_RcsC-like 1034 1173 - -
Stsc85g00019 1182 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 494 700 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc85g00019 Stsc-Chr85 94410 100526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc85g00019 54 467 Histidine Kinase Gene Family AT2G17820 66.184 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc85g00019 HATPase_c 3.4e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc85g00019 - - gmx:100814068 1165.6