Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc85g00008 ATGGCTGAAGAGAGATACAGCGGCGTTGTTCAGTGGTTCAACAACTCAAAGGGCTTCGGCTTCATCAAGCCCGACCAAGGCGGAGACGACCTCTTCGTCCACCACTCATCCATTCAATCCGACGGCGCTTTCCGAACCCTAGTTGATGGCGATCGCGTCGAGTTCTCCATTGATAACAACAACGACAAGCCCAAGGCTCTTGACGTCACTGGCCCCAATGGCGCTCCTCTCCGCTCCACTCATGACTCTGGTTACTCTTCACGCGCTGGTGCCGATAACAGACGCAACGCTTCTGCTGGAGGCGGCGGCGGAGGAGGAGGATGTTACCAGTGTGGTGATTTTGGTCACATTGCTAGGGATTGCAATCGTGCTGGTAATGGTGGTGGTGGAGGCGGCGGCGGCGGCGGCGGTGCTTGCTACAATTGCGGCGGATTTGGTCACATGGCTAGGGATTGCGTCAGTGCAGGTGGCGGCGGAGGCGGAGGAGCAAACGGTGGGGGTTGCTTTAAGTGTGGCGAGTTCGGGCACATGGCGAGGGACTGCAGTGGCGGTGGCGGCGGCGGTAATGGCGGTGGTTGCTTTAAGTGTGGTGAGTTTGGGCACATGGCAAGGGACTGCAGTGGAGGAGGCGGTGGCGGTAATGGTGGGGGTTGCTACAGGTGTGGAGAGGTTGGTCACTTGGCTAGGGATTGCAACAGAGAAGGTGGTGGCGGTGGTGGTGGGAACGGTGGAAAGAGCACATGCTACAATTGTGGGAAGCCTGGGCATTTTGCTAGGGAGTGCGTTGAGGCCTCTGGTTAA 801 0.583 MAEERYSGVVQWFNNSKGFGFIKPDQGGDDLFVHHSSIQSDGAFRTLVDGDRVEFSIDNNNDKPKALDVTGPNGAPLRSTHDSGYSSRAGADNRRNASAGGGGGGGGCYQCGDFGHIARDCNRAGNGGGGGGGGGGGACYNCGGFGHMARDCVSAGGGGGGGANGGGCFKCGEFGHMARDCSGGGGGGNGGGCFKCGEFGHMARDCSGGGGGGNGGGCYRCGEVGHLARDCNREGGGGGGGNGGKSTCYNCGKPGHFARECVEASG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc85g00008 266 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Stsc85g00008 266 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Stsc85g00008 266 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Stsc85g00008 266 Gene3D - 84 158 - -
Stsc85g00008 266 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Stsc85g00008 266 SUPERFAMILY Retrovirus zinc finger-like domains 218 263 IPR036875 GO:0003676|GO:0008270
Stsc85g00008 266 SUPERFAMILY Retrovirus zinc finger-like domains 108 153 IPR036875 GO:0003676|GO:0008270
Stsc85g00008 266 SMART csp_8 7 72 IPR011129 GO:0003676
Stsc85g00008 266 MobiDBLite consensus disorder prediction 76 93 - -
Stsc85g00008 266 SUPERFAMILY Retrovirus zinc finger-like domains 159 208 IPR036875 GO:0003676|GO:0008270
Stsc85g00008 266 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Stsc85g00008 266 ProSiteProfiles Zinc finger CCHC-type profile. 139 152 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 Pfam Zinc knuckle 107 121 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 Pfam Zinc knuckle 192 207 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 Pfam Zinc knuckle 138 152 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 Pfam Zinc knuckle 217 231 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 Pfam Zinc knuckle 167 182 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 Pfam Zinc knuckle 247 261 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 ProSiteProfiles Zinc finger CCHC-type profile. 248 261 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Stsc85g00008 266 ProSiteProfiles Zinc finger CCHC-type profile. 193 206 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 SMART c2hcfinal6 247 263 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 SMART c2hcfinal6 217 233 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 ProSiteProfiles Zinc finger CCHC-type profile. 168 181 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Stsc85g00008 266 MobiDBLite consensus disorder prediction 58 102 - -
Stsc85g00008 266 PRINTS Eggshell protein signature 236 254 - -
Stsc85g00008 266 PRINTS Eggshell protein signature 209 219 - -
Stsc85g00008 266 PRINTS Eggshell protein signature 183 198 - -
Stsc85g00008 266 PRINTS Eggshell protein signature 100 111 - -
Stsc85g00008 266 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Stsc85g00008 266 ProSiteProfiles Zinc finger CCHC-type profile. 218 231 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 ProSiteProfiles Zinc finger CCHC-type profile. 108 121 IPR001878 GO:0003676|GO:0008270
Stsc85g00008 266 PANTHER COLD SHOCK DOMAIN PROTEIN 2 208 263 - -
Stsc85g00008 266 Gene3D - 189 212 - -
Stsc85g00008 266 Gene3D - 239 266 - -
Stsc85g00008 266 Gene3D - 163 188 - -
Stsc85g00008 266 Gene3D - 213 238 - -
Stsc85g00008 266 Gene3D - 6 83 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc85g00008 Stsc-Chr85 46762 47792 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc85g00008 CSD 2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc85g00008 K09250 - gmx:100806783 285.804