Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc85g00007 ATGCTAGGTCGTTCTAGAAGCATCCTTTTTTTATCAGATAAAACCCAACCAACCTTCTCTCACTCTCTAATCCTCTCAGGGTTTTATCTTCAACTCATTCATTTCCTTCGCTCCCTCCCTTACTCACTCTTTCTTCTTCCACGAAGTGCCTTTAAGTTCTGGTCAATGGCAACAGCTCAGCTAACATCATCCTCAATTTCCTCGAGGAACGTGTCGTCGTTGGGGCTTCGACCTTCGGCGGTTCAGTTCCCCTCCGTTGCCAGAATTGGAACCCTCACTCAGAGGTCCTTCAGGGGTTTGGTTGTCAAAGCCGCCACTGTTGTTGCACCAAAGTACACTGCCATTAGGCCGCTCGGTGACAGAGTACTGGTGAAAATTAAGGAAGCGGAAGAGAAGACCGATGGAGGAATTTTACTTCCTTCAACTGCTCAAACAAAGCCACAGGGTGGGGAGGTTGTTGCTGTTGGAGAGGGAAAATCATTTGGGAAGAACAAAATAGACATTAGTGTGCAGACAGGTGCGCAAGTTGTGTACTCAAAGTATGCTGGTACTGAGGTGGAGTTCAATGGTACAAAGCATCTTATACTGAAGGACGATGACATTGTCGGTATCCTTGAGACCGATGATGTCAAGGATCTTAAACCCTTGAATGACAGAGTCTTGATTAAGGTTGCACAAGCGGAGGACAAAACTGCAGGTGGTTTGTTGCTTACCGAGGCAACCAAGGAGAAACCTTCTATCGGAACAGTGATTGCAGTCGGCCCAGGGCCCCTTGACGAGGAAGGTAACAGAAAACCTTTGTCTGTTAATTCTGGGAACACAGTCTTGTACTCCAAATATGCTGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTACATTGCATTGAGGGCCTCAGATATCATGGCTATCCTTTCCTAG 921 0.468 MLGRSRSILFLSDKTQPTFSHSLILSGFYLQLIHFLRSLPYSLFLLPRSAFKFWSMATAQLTSSSISSRNVSSLGLRPSAVQFPSVARIGTLTQRSFRGLVVKAATVVAPKYTAIRPLGDRVLVKIKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEGKSFGKNKIDISVQTGAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETDDVKDLKPLNDRVLIKVAQAEDKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSVNSGNTVLYSKYAGNDFKGKDGSDYIALRASDIMAILS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc85g00007 306 Hamap Co-chaperonin GroES [groES]. 212 306 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 PANTHER 10 KDA HEAT SHOCK PROTEIN 210 304 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 FunFam 10 kDa chaperonin 210 306 - -
Stsc85g00007 306 SUPERFAMILY GroES-like 113 206 IPR011032 -
Stsc85g00007 306 SUPERFAMILY GroES-like 212 305 IPR011032 -
Stsc85g00007 306 CDD cpn10 115 205 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 ProSitePatterns Chaperonins cpn10 signature. 213 237 IPR018369 GO:0005524|GO:0006457
Stsc85g00007 306 Gene3D GroES chaperonin 208 306 IPR037124 GO:0006457
Stsc85g00007 306 Gene3D GroES chaperonin 108 207 IPR037124 GO:0006457
Stsc85g00007 306 PRINTS 10kDa chaperonin signature 192 205 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 PRINTS 10kDa chaperonin signature 171 183 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 PRINTS 10kDa chaperonin signature 115 130 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 PRINTS 10kDa chaperonin signature 137 158 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 CDD cpn10 213 305 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 ProSitePatterns Chaperonins cpn10 signature. 115 139 IPR018369 GO:0005524|GO:0006457
Stsc85g00007 306 Hamap Co-chaperonin GroES [groES]. 114 206 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 Pfam Chaperonin 10 Kd subunit 213 304 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 Pfam Chaperonin 10 Kd subunit 115 204 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 SMART Cpn10_2 212 305 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 SMART Cpn10_2 114 205 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc85g00007 306 FunFam 20 kDa chaperonin, chloroplastic 108 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc85g00007 Stsc-Chr85 43247 45559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc85g00007 56 306 Calmodulin-binding Proteins AT5G20720 78.346 3.73e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc85g00007 K04078 - gmx:100814751 413.69