Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc85g00002 ATGGGTATCTGCTTTTCATCCACCAAGGTAGTTGGCTCCAACAGCAACAACAACCACCACCATGGCAACGGAAACTCTGCCTTCGCCGTTAGCCGGAACAGGAAACGGAATACAACCACTCAATCAACGGCGACCAACCCGGCGGCGATGGTGAGCGTCCACAACGATCAGCGGAGGAAGGAAGATGAAAAGAAGAAGAAGAATAATAATCAGCATTCGCAGAAGCCGAAGACGACGACGATAACGGCGAGAAAGCAAGTGCCGTGCGGAAAGCGAACGGATTTCGGTTACGAGAAGAACTTCGAGAAGAGATTCACGCTCGGGAAGCTTTTGGGTCATGGCCAATTCGGTTACACCTATGTTGGTATTGATAAGGCCAATGGGGATCGTGTTGCCGTTAAGAGGCTCGAGAAGGCCAAGATGGTACTACCCATAGCTGTTGAGGATGTTAAACGAGAGGTCAAGATATTGAAAGAACTTACTGGCCATGAAAACGTGGTCCAGTTCTATAATGCTTTTGAAGATGATTCATACGTGTACATAGTTATGGAGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGCCGTTACACCGAAAAAGACGCAGCAGTGATTGTAAGACAGATGCTCAAAGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACATCGGGACATGAAACCAGAGAATTTTCTTTTCAAGTCAACCAAAGAAGATTCCCCTCTAAAGGCCACAGATTTTGGCTTGTCCGATTTCATAAAACCTGGTAAGAGGTTTCAAGATATTGTTGGCAGTGCTTACTATGTTGCACCAGAAGTCCTAAAAAGAAAGTCGGGCCCTGAATCAGATGTGTGGAGTATTGGTGTGATCACTTACATTTTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACTGAAGATGGTANNNNNNNNNNAGTCTTACGGAACAAGCCTGATTTCCGCCGCAAACCATGGCCATCCATAAGCAATGCTGCCAAAGATCTTGTGAAGAAATTATTGGTAAAGGATCCTCGAGCAAGATTAACTGCTGCCCAGGCTTTATCACATCCATGGGTTAAAGAAGGAGGAGAGGCCTTGGAGATTCCTATCGATATATCTGTCCTAAACAACATGCGACAATTTGTGAAGTATAGTCGATTGAAACAATTTGCACTGAGGGCATTGGCTAGCACACTTAACGAAGAAGAGATATCTGATCTAAAAGATCAGTTTGATGCAATAGATGTTGACAAAAATGGTTCCATTAGTTTAGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAGGAATCACGTGTATTAGAGATATTGCAAGCGATAGATTGCAACACAGATGGATTAGTAGATTTCACTGAATTTGTGGCGGCTGCATTACATGTACATCAGTTGGAGGAACACGACACTGACAAATGGCATCAACGGTCACAAGCTGCCTTTGAGAAATTTGACTTAGACAAGGATGGATATATTACTCCAGATGAACTTAGAATGCATACTGGCTTGAGAGGTTCCATTGATCCGTTGCTTGAGGAAGCTGATATTGACAAGGATGGGAAAATCAGCCTACCGGAATTCCGTAGACTTCTCAGAACCGCAAGCATTAGTTCTCAACACGTGACCAGCCCCCCTCGGCGGAAGCTATAG 1695 0.4448 MGICFSSTKVVGSNSNNNHHHGNGNSAFAVSRNRKRNTTTQSTATNPAAMVSVHNDQRRKEDEKKKKNNNQHSQKPKTTTITARKQVPCGKRTDFGYEKNFEKRFTLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKAKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGXXXXVLRNKPDFRRKPWPSISNAAKDLVKKLLVKDPRARLTAAQALSHPWVKEGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEEEISDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDCNTDGLVDFTEFVAAALHVHQLEEHDTDKWHQRSQAAFEKFDLDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASISSQHVTSPPRRKL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc85g00002 564 CDD STKc_CAMK 104 364 - -
Stsc85g00002 564 Gene3D - 386 545 - -
Stsc85g00002 564 Gene3D - 406 475 - -
Stsc85g00002 564 Pfam Protein kinase domain 106 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc85g00002 564 ProSitePatterns EF-hand calcium-binding domain. 530 542 IPR018247 -
Stsc85g00002 564 ProSiteProfiles Protein kinase domain profile. 105 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc85g00002 564 ProSiteProfiles EF-hand calcium-binding domain profile. 408 443 IPR002048 GO:0005509
Stsc85g00002 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Stsc85g00002 564 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Stsc85g00002 564 FunFam CDPK-related kinase 1 98 190 - -
Stsc85g00002 564 PANTHER SERINE/THREONINE-PROTEIN KINASE 79 534 - -
Stsc85g00002 564 ProSitePatterns EF-hand calcium-binding domain. 500 512 IPR018247 -
Stsc85g00002 564 MobiDBLite consensus disorder prediction 1 84 - -
Stsc85g00002 564 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Stsc85g00002 564 ProSiteProfiles EF-hand calcium-binding domain profile. 525 552 IPR002048 GO:0005509
Stsc85g00002 564 ProSitePatterns EF-hand calcium-binding domain. 421 433 IPR018247 -
Stsc85g00002 564 SMART serkin_6 105 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc85g00002 564 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Stsc85g00002 564 ProSiteProfiles EF-hand calcium-binding domain profile. 487 522 IPR002048 GO:0005509
Stsc85g00002 564 SUPERFAMILY EF-hand 394 548 IPR011992 -
Stsc85g00002 564 MobiDBLite consensus disorder prediction 1 52 - -
Stsc85g00002 564 Gene3D Transferase(Phosphotransferase) domain 1 191 385 - -
Stsc85g00002 564 Pfam EF-hand domain pair 493 546 IPR002048 GO:0005509
Stsc85g00002 564 Pfam EF-hand domain pair 412 473 IPR002048 GO:0005509
Stsc85g00002 564 FunFam Calcium-dependent protein kinase 28 406 475 - -
Stsc85g00002 564 SUPERFAMILY Protein kinase-like (PK-like) 103 377 IPR011009 -
Stsc85g00002 564 Gene3D Phosphorylase Kinase; domain 1 98 190 - -
Stsc85g00002 564 SMART efh_1 449 477 IPR002048 GO:0005509
Stsc85g00002 564 SMART efh_1 412 440 IPR002048 GO:0005509
Stsc85g00002 564 SMART efh_1 521 549 IPR002048 GO:0005509
Stsc85g00002 564 SMART efh_1 491 519 IPR002048 GO:0005509
Stsc85g00002 564 MobiDBLite consensus disorder prediction 54 69 - -
Stsc85g00002 564 FunFam calcium-dependent protein kinase 28-like 191 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc85g00002 Stsc-Chr85 10399 15735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc85g00002 1 560 EF-hand Containing Proteins AT2G17890 73.473 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc85g00002 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc85g00002 K13412 - gmx:100817249 912.524