Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc85g00001 ATGTGTGTTGAGAGTTGTGAACACAGAGCCAGAATGGAAATGGAAGGAGGAAATGGTGGATCATCAAGTAAGAAAGGATATAATAGAGGGGCATGGACACCTGAGGAAGATGAGATGCTAGCTCAATGCATTGAGATTCATGGTGCCAAGAAGTGGAAGACGGTTGCAGCCAAATCAGGTCTGAACAGATGTGGAAAGAGTTGCCGGTTGAGATGGTTGAACTACCTTAGACCCAATATCAAGAGAGGTAACATTTCAGATGAAGAAGAGGATTTGATCATTAGGCTTCACAACTTGCTCGGAAACAGGTGGTCATTGATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAGATCAAGAACTACTGGAATTCGTGTTTGTGCAAGAAGGTTAATCCAAAAGACCAAAAACACCCCAACACTACCACAACTACTACGCCACAACAGACTTGTGCTGATGAGGGAATATCATTGGCCATGGATGGAGGAAGTGGTGATCACATGGAAATGAAGTTTGATGCGAATGAATTTTTTGACTTCTCAACTGAAGGACCCTATGCATTGGATTGGGTCAACAAGTTTCTGGAGCTTGATGTAATCCCAGAGAGTTCTTCAATTGAATAG 624 0.4311 MCVESCEHRARMEMEGGNGGSSSKKGYNRGAWTPEEDEMLAQCIEIHGAKKWKTVAAKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHNLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNPKDQKHPNTTTTTTPQQTCADEGISLAMDGGSGDHMEMKFDANEFFDFSTEGPYALDWVNKFLELDVIPESSSIE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc85g00001 207 Pfam Myb-like DNA-binding domain 82 126 IPR001005 -
Stsc85g00001 207 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Stsc85g00001 207 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Stsc85g00001 207 CDD SANT 86 124 IPR001005 -
Stsc85g00001 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Stsc85g00001 207 CDD SANT 31 76 IPR001005 -
Stsc85g00001 207 Gene3D - 21 82 - -
Stsc85g00001 207 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 21 149 - -
Stsc85g00001 207 SMART sant 28 78 IPR001005 -
Stsc85g00001 207 SMART sant 81 129 IPR001005 -
Stsc85g00001 207 Gene3D - 85 154 - -
Stsc85g00001 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 131 IPR017930 -
Stsc85g00001 207 FunFam Transcription factor TT2 85 154 - -
Stsc85g00001 207 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Stsc85g00001 207 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Stsc85g00001 207 FunFam Myb transcription factor 29 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc85g00001 Stsc-Chr85 6820 7919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc85g00001 27 182 MYB Transcription Factor Family AT5G40330 51.266 3.23e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc85g00001 Myb_DNA-binding 8.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc85g00001 K09422 - tcc:18606229 254.988