Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc858g00003 ATGGGCGCCGACAACCTCAAGTTCCTCTGCAGCTACGACGGTAAGATCCTCCCACGCTACCCCGACGCCAAGCTCCGCTACCTCGGCGGCCACACCCGCCTCCTCTCCCTCCCTCGCTCCACTCCCTTCTCAGAGCTGCTTCTGAAGCTTGGAGACATCTGCGGTTCCCCCGTCACTCACCTCCGCTGCCAGCTACCAACCGAGGACCTCGACGCCTTGGTCTCCATCACCTCCGATGAGGATCTCTCTAACGTTCTCGAGGAATACGACCGCCTTTCATCTTCCAAGATCAGACTCTTCCTTTCATATTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCTTCTTCCTCCTCGCCGTCTTCGTTTCGCCCCCAAATGTGTAACGGAACCAAGAAATCCGCTGTCACTGCCAGAAATGCTACTTTCCCCTGCTACGGTTACCGTGTACCGGGAAACGCCGGTGGTGTGGTTTACCTCGCAAACAACTGCAACCACTGGCACTAA 504 0.5714 MGADNLKFLCSYDGKILPRYPDAKLRYLGGHTRLLSLPRSTPFSELLLKLGDICGSPVTHLRCQLPTEDLDALVSITSDEDLSNVLEEYDRLSSSKIRLFLSYSSSSSSSSSSSSSSSPSSFRPQMCNGTKKSAVTARNATFPCYGYRVPGNAGGVVYLANNCNHWH 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc858g00003 167 Pfam PB1 domain 22 102 IPR000270 GO:0005515
Stsc858g00003 167 PANTHER OS05G0427100 PROTEIN-RELATED 6 120 - -
Stsc858g00003 167 SMART PB1_new 20 104 IPR000270 GO:0005515
Stsc858g00003 167 MobiDBLite consensus disorder prediction 104 125 - -
Stsc858g00003 167 Gene3D - 24 104 - -
Stsc858g00003 167 CDD PB1_UP2 9 101 - -
Stsc858g00003 167 SUPERFAMILY CAD & PB1 domains 22 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc858g00003 Stsc-Chr858 18866 20467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc858g00003 4 112 MAP Kinase Kinase Kinase AT3G46920 46.087 7.79e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc858g00003 - - gmx:100786933 164.081