Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc858g00002 ATGGAAGAAGCATTTAGGCGTCTCAACGGCATGCCTTTGTTCCAAGAACCCGACCCGCAACATGACTCCACCGTCGCCGATCACCACAAGAAAACCAACAACAAGAAGCTGGCCAAGGACGCCGGTGCCGGAGGCGGGTCTGCCGCCGGACCAATGAGGTACCGCGGCGTGAGGCGGAGGCCATGGGGACGTTATGCGGCGGAGATAAGGGACCCGCAGTCGAAGGAGCGGCGGTGGCTGGGGACGTTCGACACGGCGGAGGAAGCTGCCTGCGCCTACGACTATGCGGCGAGAGCGATGAGAGGCGTGAAGGCGAGGACGAACTTCGTGTACCCTGATTCTCCTCCTCATCCTCACCCATTTCGTCACTCTGAACTGTTCCAAGCGTTCAACTTCCCGAAGCAGCAGTGCCACGTCAGCAAGTTAGTTCAGAACGGCCGCCATGGCGTAACTCAGCAGCGAAACGCTGCCAACAATAATTCTCATCCTCCCCTGAACATGCTTCTGTTCCGCGAGTTTCTGAATTCATCGAATCCGTGTTTGGTTTCTTCTTCTTCTTCTGCTGCTGCTGATGGTGGTTCCGCTTCTAGTGGTGCTAATAACACTCCGTATCATCAGTTTTGCATGAAGGAGGGTGGTTCCTCTTGCTGCTTCAACGGTAACTGTTGCGGTGGTGGTGGTTCCAACAACGGAACTGCTGCAGGTGTTGAGGAAGAAGAGTCGTTATTGGAGTTGTTCCCTAGAGAGTCTTCAGACTCTGGTCTCTTGGAAGAGATTGTTCAACGTTTCTTGCCCAAATCCAAAACCCTTCCAAGCAAGAATTGTGACACCACTTTGAAGCTCAAAGCCGAGGCGCCACCCGTTTCCTTTCCTCAACAACAACTCGCTACTTTCATTCCTTCTTCTTCTTCTACCACTTCCCATTATCATCAGGGCTATGATGATGACAGGAAGATGATGATGATGAGGGGTTTTGATCATCAAAATTTCCCAATCCAGCAATTTGATTACGGATTTAACCCTATTCATCACCATGGCTCAATGGGAAACGAACAGTTGATGATGATGAACCCTACTACTACTATGCTGGAAGATGCATTTCAGTATCAACAACTCTTCAATGCCTTTGCAGCCAGGATGCAGAATGCTTAA 1152 0.5104 MEEAFRRLNGMPLFQEPDPQHDSTVADHHKKTNNKKLAKDAGAGGGSAAGPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDYAARAMRGVKARTNFVYPDSPPHPHPFRHSELFQAFNFPKQQCHVSKLVQNGRHGVTQQRNAANNNSHPPLNMLLFREFLNSSNPCLVSSSSSAAADGGSASSGANNTPYHQFCMKEGGSSCCFNGNCCGGGGSNNGTAAGVEEEESLLELFPRESSDSGLLEEIVQRFLPKSKTLPSKNCDTTLKLKAEAPPVSFPQQQLATFIPSSSSTTSHYHQGYDDDRKMMMMRGFDHQNFPIQQFDYGFNPIHHHGSMGNEQLMMMNPTTTMLEDAFQYQQLFNAFAARMQNA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc858g00002 383 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 216 - -
Stsc858g00002 383 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Stsc858g00002 383 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Stsc858g00002 383 MobiDBLite consensus disorder prediction 21 37 - -
Stsc858g00002 383 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Stsc858g00002 383 MobiDBLite consensus disorder prediction 1 54 - -
Stsc858g00002 383 CDD AP2 53 109 IPR001471 GO:0003700|GO:0006355
Stsc858g00002 383 Gene3D AP2/ERF domain 52 111 IPR036955 GO:0003700|GO:0006355
Stsc858g00002 383 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Stsc858g00002 383 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Stsc858g00002 383 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Stsc858g00002 383 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc858g00002 Stsc-Chr858 14290 15441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc858g00002 1 266 AP2-EREBP Transcription Factor Family AT1G24590 36.331 4.21e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc858g00002 AP2 8.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc858g00002 - - ahf:112736058 500.36