Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc857g00002 ATGATTGCTGATAGAGGTGGAATTGATGATGATGCCGAGGGTCGTCGCAGTGGCGTTGCGGCCAGCGATAGGGTTCCTCTGGTGTCTCCAGCTTCTTCGTCGTCTGTGGCTGGTGGTAGTGGGCAGGCTGATGGTGATGTGGGGAATGGTGTAGATAGTAACAATAGGGATACATCAAACTACCAGAGATATGATATTCAGCAGATTGCAAAGTGGATTGAGCAGATTCTTCCTTTCTCACTCTTGTTGTTGGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGGGATAGGAAAGTCTCAGTTCTTGTTGGTATATCTATTGCATTCATGCTTCATGTCATGTTCATTTATTGGTGGTACCGAAATGATGATCTTTTATACCCACTCGTGTTGGTTCCTCCAAAAGCAACACCTTTCTGGCATGCAATATTCATCATCCTGGTTAATGATGCTTTGATGCGGCAGGCAGCAATGGCCTTCAAGTGTATTCTGTTAATATATTACAAAAGTGGCAGAGGTCATAGCTTCCGTCGGCAGGCTCAAATGTTAACACTGATTGAGTACACACTGCTATTGTATCGTGCCTTGTTACCAACACCCGTTTGGTACCGGTTTTTCTTAAACCGGGCATATGGCAGTCTCTTTTCATCCCTGACCACAGGGTTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGGTCCAATGCTTTATATCTGCCTTGAAAGCATTGTCAAGAAAGGAAGTTCATTATGGGGTTAATGCCACAATGGAGCAGGTTAATGCTGCTGGTGACTTATGCGCCATATGCCAGGAAAAAATGCATGCCCCAATATTGTTGCGCTGCAAACACATTTTCTGCGAGGAGTGTGTATCGGAATGGTTTGAAAGAGAAAGGACATGCCCACTATGCAGAGCATTGGTAAAGCCTGCTGATCTGCGTACCTTCGGAGACGGATCAACGAGTCTCTTTTTCCAGTTGTTCTAG 1065 0.4404 MIADRGGIDDDAEGRRSGVAASDRVPLVSPASSSSVAGGSGQADGDVGNGVDSNNRDTSNYQRYDIQQIAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLVGISIAFMLHVMFIYWWYRNDDLLYPLVLVPPKATPFWHAIFIILVNDALMRQAAMAFKCILLIYYKSGRGHSFRRQAQMLTLIEYTLLLYRALLPTPVWYRFFLNRAYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVNATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc857g00002 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 341 IPR013083 -
Stsc857g00002 354 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 37 354 IPR044235 GO:0061630|GO:1904294
Stsc857g00002 354 ProSitePatterns Zinc finger RING-type signature. 308 317 IPR017907 -
Stsc857g00002 354 SMART ring_2 293 330 IPR001841 -
Stsc857g00002 354 MobiDBLite consensus disorder prediction 1 18 - -
Stsc857g00002 354 Pfam Zinc finger, C3HC4 type (RING finger) 291 334 - -
Stsc857g00002 354 SUPERFAMILY RING/U-box 283 336 - -
Stsc857g00002 354 CDD RING-HC_RNFT1-like 291 331 - -
Stsc857g00002 354 ProSiteProfiles Zinc finger RING-type profile. 293 331 IPR001841 -
Stsc857g00002 354 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc857g00002 Stsc-Chr857 7005 14849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc857g00002 6 354 C3H Transcription Factor Family AT5G01960 70.506 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc857g00002 - K22379 qsa:O6P43_020068 554.673