Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc84g00011 ATGGATTTGGATGATTTCCGATCCATATTGGATACAGCCGGCGTCGACGTTTGGCTCTTCATCGACACCGCCATCACCGTCGCCTCCCTGGATTGCGGCGACGAGCTTAGGCGACGGAGAGATGGAATCATAGAACGAATCTTCGCTGCCACCACGCCTCCTCCGCCCTGCCGCAACTGCGACGGCGATCGTAACCTGAGGTCCAATGGCCACCAAATCAAGAAACGCCTCAGCCCTAGCCCTAGCCCTCAGCGACAACACAGCCACCATCAGCAACGTCGTGGTGGTCGTGGTTCCGCCGCTGCAGTTTCTCCCTCGACGCCGCAGTCTCTCGGAGATGAGGATGACAACGGCCACAACGACGGCCCCGAAGACGAACGTGAAGAGTTGGATCCTTACGGCGGCTTGTTCGATGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGAACCTGACCAGCCTGAAGAATCGTTGGTGGAGCTGCTGCAAAATCTCGCGGACATGGATATTACATTCCAAGCGCTTAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGAGGAAGCATCCCTCTAATGACGTTCGCAGATTGGTGAAGCTACTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTAAGGTTGAATCAACCGGGTGGAACAGCTTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAAACACCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGAAGTTCTGGGTCTGACCGTAACACCTCAGAGGCAGAACCAAAACCAAAAGTGATTCCCCGCAAAGAAGCTCCACCAAAACCAACGCCGCCACCTTCAGTCCCTACCCCTTCCATCGCCTTCCAAAACAGACAGAGAGAGCAAAGAGATAATAGAGATTTTGATGCGGAGAGGCTTGCTTCGGCGAGGAAGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCGAAAAAGCAAAGAACGATTCAGGTGATGGACATCCACGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCGGGGGCGGTTCTCAGGGAAGGCACTGGTGA 1119 0.5264 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPPPCRNCDGDRNLRSNGHQIKKRLSPSPSPQRQHSHHQQRRGGRGSAAAVSPSTPQSLGDEDDNGHNDGPEDEREELDPYGGLFDDEQKKILEIKEQLEEPDQPEESLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVRLNQPGGTASLMADGDSPPLKNTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPSIAFQNRQREQRDNRDFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAFFGKNKGGGGSQGRHW 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc84g00011 372 Pfam TFIIS helical bundle-like domain 164 213 IPR017923 -
Stsc84g00011 372 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 372 IPR044790 -
Stsc84g00011 372 MobiDBLite consensus disorder prediction 281 295 - -
Stsc84g00011 372 Coils Coil 314 341 - -
Stsc84g00011 372 CDD TFIIS_I 141 214 - -
Stsc84g00011 372 MobiDBLite consensus disorder prediction 344 372 - -
Stsc84g00011 372 ProSiteProfiles TFIIS N-terminal domain profile. 139 216 IPR017923 -
Stsc84g00011 372 MobiDBLite consensus disorder prediction 222 316 - -
Stsc84g00011 372 MobiDBLite consensus disorder prediction 73 135 - -
Stsc84g00011 372 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 142 222 IPR035441 -
Stsc84g00011 372 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 223 IPR035441 -
Stsc84g00011 372 SMART TFS2_5 144 215 IPR003617 GO:0005634
Stsc84g00011 372 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc84g00011 Stsc-Chr84 111481 114478 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc84g00011 Med26 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc84g00011 - - aip:107622503 625.165