Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc84g00005 ATGTCTTCTCCAACACATACACCAACGCCGACCATGGATCCCTCTTCACGCCACCACTCCTACAATCGTAAGCAGAAATCCCTCGGCCTCTTGTGTACCAATTTCTTGAAATTGTATAATAAGGACACCGTCCACTCGATCGGCCTCGACGATGCAGCAACTCGATTAGGTGTTGAGAGGCGGCGGATCTATGATATAGTGAACGTTTTGGAGAGTGTCGGGGTGCTTTCTAGAAAAGCCAAGAATCAGTATACTTGGAAAGGGTTTGCTGCTATTCCTGGGACTTTACAAGAACTCAAGGACGAGGGTTTGAGGGAGAATCCTTATGGTTTTGATGGTGATAATGAAATTACGAAATTGTCAGATGATGAAGATGATGAAGAAATAATTTCAAATCCCAGTACTGGAAGTCAGAATGACAAATCAAATCCCAATTCCTCACTTATCAAATCTTTGAAGCCTGAAAACAGAAGGGAAAAATCTTTGGCGCTTCTTACTCAAAATTTTGTCAAGCTCTTTGTCTGCTCTAATATTGAAATGGTCTCCCTTGACGAAGCTGCAAAACTGTTGCTTGGAAATGCTCATAATACATCAATAATGAGAACAAAAGTCAGACGATTATATGATATTGCAAATGTGTTGTCCTCCATGAACCTAATTGAGAAGACTCATACAACAGACACAAGAAAACCAGCATTCAGGTGGCTTGGTTTAAGAGGGAAGCCATGGAGCGAGTCAGGTGACTGCGGCGAGTCAAGGAAAAGGAGGTTTGGTGATGACATCAGCAACATTAGCTTCAAGAGGAACAAAGTGGATCTGTTCATGAATGCTGAGAGTAGCTGCAAGATGCAAGACCAACTCGAAAACGACGACGATATTTGTTGGCGAGCACACACAGATAAAGGCACTGTGAAACAAGAAGGAACACAGAATTCAAAGAGCTACCAGTTTGGTCCTTTTGCTCCAGAGTTTGTGTCCAAAAATGGTGGAGCCTCTGAGAATAGTGGTGTGAAGCAGGTTCATGATTGGGAGAGTCTCTCAAATGTGTATCGTCCTCGGTATCAAAACCAAGATTGA 1077 0.428 MSSPTHTPTPTMDPSSRHHSYNRKQKSLGLLCTNFLKLYNKDTVHSIGLDDAATRLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFAAIPGTLQELKDEGLRENPYGFDGDNEITKLSDDEDDEEIISNPSTGSQNDKSNPNSSLIKSLKPENRREKSLALLTQNFVKLFVCSNIEMVSLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKPWSESGDCGESRKRRFGDDISNISFKRNKVDLFMNAESSCKMQDQLENDDDICWRAHTDKGTVKQEGTQNSKSYQFGPFAPEFVSKNGGASENSGVKQVHDWESLSNVYRPRYQNQD 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc84g00005 358 SUPERFAMILY "Winged helix" DNA-binding domain 22 86 IPR036390 -
Stsc84g00005 358 Gene3D - 18 90 IPR036388 -
Stsc84g00005 358 Gene3D - 153 239 IPR036388 -
Stsc84g00005 358 MobiDBLite consensus disorder prediction 122 153 - -
Stsc84g00005 358 MobiDBLite consensus disorder prediction 1 22 - -
Stsc84g00005 358 FunFam E2F transcription factor-like E2FE 152 239 - -
Stsc84g00005 358 PANTHER TRANSCRIPTION FACTOR E2F 6 354 IPR015633 GO:0000978|GO:0006357
Stsc84g00005 358 MobiDBLite consensus disorder prediction 1 16 - -
Stsc84g00005 358 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Stsc84g00005 358 Pfam E2F/DP family winged-helix DNA-binding domain 159 237 IPR003316 GO:0005667|GO:0006355
Stsc84g00005 358 SUPERFAMILY "Winged helix" DNA-binding domain 159 238 IPR036390 -
Stsc84g00005 358 FunFam E2F transcription factor 8 18 90 - -
Stsc84g00005 358 MobiDBLite consensus disorder prediction 131 151 - -
Stsc84g00005 358 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Stsc84g00005 358 SMART E2F_TDP_2 157 237 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc84g00005 Stsc-Chr84 34261 40969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc84g00005 18 357 E2F-DP Transcription Factor Family AT3G48160 56.022 4.64e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc84g00005 E2F_TDP 1.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc84g00005 K09391 - qsa:O6P43_030916 471.855