Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc84g00003 ATGGGAACTGCAGAACAAACGGTCGTTGCTGTCATCATGGTTGGAGGCCCTACCAAAGGTACTAGATTCAGGCCATTATCATTCAACATGCCGAAGCCACTTTTTCCGTTGGCGGGACAACCCATGGTCCATCACCCAATTTCTGCTTGTAAAAGGATTCCTAATTTGGCTCAGATTTATCTAATTGGTTTCTACGAGGAACGCGAATTCGCATTGTTTGTTTCCTCCATCTCAAATGAGCTTAAAGTTCCTATTAAATACTTGAAAGAAGACAAGCCTCATGGATCAGCTGGTGGTCTTTATAGCTTCAGAGATCAAATCATGGAGGATAATCCGTCACATATTTTCTTGCTAAACTGTGATATTTGCTCCAGCTTTCCACTTCCAGAAATGCTCGATGCACACAAAAAATATGGTGGGATGGGAACAATACTAGTTGTTAAGGTTTCACCAGAGTCGGCCAATGAATTTGGGGAATTGGTGGCTGATCCAGTAACCAACGAACTGTTGCATTACACAGAGAAACCTGAAACTTTTGTAAGTGATAGAATAAACTGTGCTAATCTAAGACGTGTCTCCAGCTTTGAAGCAATGCAGGCAGATACAAGGAATCTTCCTTCCAATTATGTCAGATTAGATCAAGATATCCTCTCACCTCTTGCGGGGAAGAAACAGTTATACATTTATGAAACCAAAGACTTCTGGGAACAAATCAAAACTCCAGGGATGTCCATAAAATGTTCTGCTCTGTATCTCTCCCAATTTCGTCACACATCCCCGCAACTATTGGCAAATGGAGATGGTAATAAGAAAGCAAGCATCAGTGGTGATGTTTATATTCACCCATCTGCTAAAGTGCATCCATCAGCAAAGATTGGCCCTAGTGTATCAATATCTGCAAATGCTCGTATCGGAGCTGGTGCAAGGCTCCTAAATTGTATCATCCTTGATGATGTAGAAATTAAGGAGAATGCTGTTGTCATTCATGCAATTGTTGGATGGAAATCTTCTATTGGACGCTGGGCCCGTATCCAGGCTAGTGGAGATTACAATGCAAAACTTGGGGTCACTTTACTTGGTGAATCTGTGACAGTTGAGGATGAGGTTGTGGTTGTTAATAGCATTGTCCTTCCACACAAGACTTTAAATGTGAGAGTTCAGGATGAAATTCTTTTGTAA 1179 0.4148 MGTAEQTVVAVIMVGGPTKGTRFRPLSFNMPKPLFPLAGQPMVHHPISACKRIPNLAQIYLIGFYEEREFALFVSSISNELKVPIKYLKEDKPHGSAGGLYSFRDQIMEDNPSHIFLLNCDICSSFPLPEMLDAHKKYGGMGTILVVKVSPESANEFGELVADPVTNELLHYTEKPETFVSDRINCANLRRVSSFEAMQADTRNLPSNYVRLDQDILSPLAGKKQLYIYETKDFWEQIKTPGMSIKCSALYLSQFRHTSPQLLANGDGNKKASISGDVYIHPSAKVHPSAKIGPSVSISANARIGAGARLLNCIILDDVEIKENAVVIHAIVGWKSSIGRWARIQASGDYNAKLGVTLLGESVTVEDEVVVVNSIVLPHKTLNVRVQDEILL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc84g00003 392 CDD M1P_guanylylT_A_like_N 10 251 - -
Stsc84g00003 392 Gene3D Hexapeptide repeat proteins 259 389 - -
Stsc84g00003 392 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 9 391 - -
Stsc84g00003 392 Pfam Nucleotidyl transferase 10 182 IPR005835 GO:0009058
Stsc84g00003 392 SUPERFAMILY Nucleotide-diphospho-sugar transferases 9 334 IPR029044 -
Stsc84g00003 392 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 2 254 IPR029044 -
Stsc84g00003 392 FunFam Putative GDP-mannose pyrophosphorylase 261 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc84g00003 Stsc-Chr84 28213 33288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc84g00003 20 376 Eukaryotic Initiation Factors Gene Family AT3G02270 21.842 8.49e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc84g00003 K00966 - gmx:100817201 684.1