Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc843g00002 ATGGCAATTTCTTCAAATTGCCATCTTAAAATAGCAATAATCCTTCTTGTTATTGTTCTTCAAAATTCAAGAACTATACATTGCCGGCACCGCCATGATCATGCTGAGAGAAACAAGGGAATCAGATTGAGGAATGGATTGTTGTCCAACATGAGTAGGATTGAGTTCTCTGAAGAACAGTTCATGAAATGGGTTAACTTTGTTGGTAATCTCAATCATTCAATGTTCAAGGCTGCAAAGAACAAGCTATTTGCTTCTTACACTCTGCATGTTGATAAGAACCCTGCACTTGGAGACTTCACTTCCATTCAAGAAGCCATTGATTCTCTTCCTTCCATTAATCTTGTTAGAGTCATCATCAAGGTCCATGCAGGTCTTTACACTGAGAAAGTGAGCATTCCTCCATTGAAATCATACATAACAATAGAAGGAGAAGGTGCAGACAAAACAATTGTTCAATATGGTGACACAGCAAAAACACTTGGCCCAAATGGGAGGCCATTGGGAACCTATGGCTCTGCTACTTTTGCTGTTAATTCACCTTATTTTATTGCAAGGAACATCACATTCAAGAACACTACTCCAGTTCCTGCAGCAGGAGCAATTGGAGTACAGGCAGTGGCATTCAGGATTTCAGCAGACACAGCAGCATTCTTTGGATGCAGTTTCTTGGGTGCACAAGACACCCTCTATGATCATATTGGAAGACATTACTATAAAGATTGTTACATTGAAGGCTCTGTTGATTTCATATTTGGCAACGCCCTCTCTCTATTTGAGGGATGTCAGGTGCACGCAATAGCACTGAATATGGGAGCGTTAACGGCACAAGGAAGGAGTAGCATGCTGGAGGACACAGGGTTCTCATTCGTGAACTGTAGGGTCACAGGATCAGGAGCACTGTACCTAGGAAGGGCATGGGGTCCCTTTTCACGCGTGGTATTCGCCTACACTTATATGGACAACATTATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGAGCTGGAGCAAGCTTTGCAGGGAGGGTATCATGGTCAAGGGAACTCTCTGATGATGAAGCTAAACCTTTTCTTTCTCTTTCCTTTATTGATGGCACTGAATGGATCAATCTTTGA 1164 0.4244 MAISSNCHLKIAIILLVIVLQNSRTIHCRHRHDHAERNKGIRLRNGLLSNMSRIEFSEEQFMKWVNFVGNLNHSMFKAAKNKLFASYTLHVDKNPALGDFTSIQEAIDSLPSINLVRVIIKVHAGLYTEKVSIPPLKSYITIEGEGADKTIVQYGDTAKTLGPNGRPLGTYGSATFAVNSPYFIARNITFKNTTPVPAAGAIGVQAVAFRISADTAAFFGCSFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCQVHAIALNMGALTAQGRSSMLEDTGFSFVNCRVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASFAGRVSWSRELSDDEAKPFLSLSFIDGTEWINL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc843g00002 387 Pfam Pectinesterase 98 381 IPR000070 GO:0030599|GO:0042545
Stsc843g00002 387 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 80 386 - -
Stsc843g00002 387 SUPERFAMILY Pectin lyase-like 85 386 IPR011050 -
Stsc843g00002 387 Gene3D - 84 387 IPR012334 -
Stsc843g00002 387 FunFam Pectinesterase 85 387 - -
Stsc843g00002 387 ProSitePatterns Pectinesterase signature 2. 244 253 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc843g00002 Stsc-Chr843 13413 17353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc843g00002 100 385 Carbohydrate Esterase AT5G47500 50.871 9.42e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc843g00002 K01051 - gmx:100793314 630.943