Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc843g00001 ATGGGGAGAGCCACAAGGTGGTTGAAGAACTTGTTTGGGATAAGAAGAGACAAAGAACAACAACAATACAAAGAAGAACACTCAAATTATGGTGGAGACCCCAGAAGCATGAAATTCTCTTCTTCATCTTCTTCTTCTGCTTCTGCTGCTCAGAGAAATTTAAATAATTCTAGAGTTCTGTGTCACAATCCAACTACCATTCCACCAAACATATCTCCAGCAGAAGCAGCTTGGTTGCAGTCTTTCTACAATGAGACAGAGAAGGAGCAGAACAAGCATGCCATTGCTGTTGCTGCTGCTACTGCAGCTGCAGCTGATGCTGCTGTGGCAGCAGCACAGGCTGCAGTTGCAGTGGTTAGGCTCACCAGCCATGGAAGAGGTACCATGTTTGGTGCTGGACATGAGATTTGTGCTGCCACCAAGATTCAGACTGTGTTTAGAGGCTACTTGGCAAGGAAAGCACTGAGAGCCTTAAAGGGATTGGTTAAGTTACAGGCACTTGTCAGAGGGTATTTAGTGAGGAAGCAAGCAACAGCAACACTGCATGGAATGCAGGCACTTATTAGAGCTCAAGCCACAGTGAGGTCTCAGAAAAAATATCAAGGATTCATGGCCACAAAGAATAATTCACATAAGTCTCAAATCCGTGCACGAAGATCCATGGAGAGATTTGATGACACTAGGAGTGAGTACACAGCTCCAACTCATAGTAGAAGCCCCAAAATTGTGGAAGTGGACACTGGTATTAGGCCTAAGTCAAGGTCCCGGAGAAGCAACACATCAATGTCGGATTTTGGTGATGACCCTGCATTCCAAACAATGTCCTCTCCCCTTCCAATCCCATGCCGGACACCGGGGCGGTTGTCAATACCGGATCATTCGGATTGGGGGCTGACAGGGGAAGAGTGCAGATTCTCAACTGCACAAAGCACTCCAAGGTTTGCAACAAGCACTTGTAGTTGTGGATCAGCTGCAGCCATGACACCAAAGAGTGTGTGCAATGAGAGCTTCTTCTATGGGAATTGTCCGAATTACATGGTGAGCACGCAGTCTTTCAAGGCGAAGTTGAGGTCTCATAGTGCTCCAAAGCAAAGGCCAGAGCCAGGAGGTGCAAGGAAGAGGCTTACCCTAAATGAGATGATGGAATCTAGGAATAGTTTGAGTGGGGTTAAGATGCAGAGGTCATGCTCACAGATTCAAGAAGCCATTAACTTCAAGAATGCTGTGATGGGTAGGCTTCACACTAGGGATGCAGACAGAAACCACTTCCAAAAGAGGAAATGGTGA 1287 0.4662 MGRATRWLKNLFGIRRDKEQQQYKEEHSNYGGDPRSMKFSSSSSSSASAAQRNLNNSRVLCHNPTTIPPNISPAEAAWLQSFYNETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTMFGAGHEICAATKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQATATLHGMQALIRAQATVRSQKKYQGFMATKNNSHKSQIRARRSMERFDDTRSEYTAPTHSRSPKIVEVDTGIRPKSRSRRSNTSMSDFGDDPAFQTMSSPLPIPCRTPGRLSIPDHSDWGLTGEECRFSTAQSTPRFATSTCSCGSAAAMTPKSVCNESFFYGNCPNYMVSTQSFKAKLRSHSAPKQRPEPGGARKRLTLNEMMESRNSLSGVKMQRSCSQIQEAINFKNAVMGRLHTRDADRNHFQKRKW 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc843g00001 428 MobiDBLite consensus disorder prediction 254 270 - -
Stsc843g00001 428 ProSiteProfiles IQ motif profile. 159 186 IPR000048 GO:0005515
Stsc843g00001 428 MobiDBLite consensus disorder prediction 215 232 - -
Stsc843g00001 428 Pfam IQ calmodulin-binding motif 137 156 IPR000048 GO:0005515
Stsc843g00001 428 Pfam IQ calmodulin-binding motif 162 176 IPR000048 GO:0005515
Stsc843g00001 428 MobiDBLite consensus disorder prediction 18 32 - -
Stsc843g00001 428 SMART iq_5 134 156 IPR000048 GO:0005515
Stsc843g00001 428 SMART iq_5 157 178 IPR000048 GO:0005515
Stsc843g00001 428 MobiDBLite consensus disorder prediction 34 48 - -
Stsc843g00001 428 MobiDBLite consensus disorder prediction 207 282 - -
Stsc843g00001 428 PANTHER IQ-DOMAIN 5-RELATED 1 388 - -
Stsc843g00001 428 MobiDBLite consensus disorder prediction 18 48 - -
Stsc843g00001 428 Gene3D - 137 187 - -
Stsc843g00001 428 Pfam Protein of unknown function (DUF4005) 311 389 IPR025064 -
Stsc843g00001 428 ProSiteProfiles IQ motif profile. 138 163 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc843g00001 Stsc-Chr843 7936 10021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc843g00001 1 392 IQD Protein Family AT3G16490 46.209 1.97e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc843g00001 - - tcc:18588500 504.597