Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc83g00018 ATGAGTATTCAGTCACAACAGCAACAAAGTAGAAGCAACAAAAACCAACAATTTAAAGATGAAGAAGAAGATAACAAAGAATTGCTACATTCGGATAGCGAGACAATACCACTGTCCTCACCGTTCCCGCCACAATCGGCGGTTTTAGATGGAGACAATGCAGAATTTGTGTATGCAGCCAAGGACAAGGTGCAAATATTCGATGTAGAGTCGGCCGGAAGAAGTGGCACCGGGTCCACGGTGGTGCCACCGTTCTCATGGAGGAAACTCTGGCTCTTTACAGGGCCAGGGTTGCTCATGAGTGTGGCATTCTTGGACCCGGGGAACCTTGAAGGTGACCTACAAGCAGGTGCAATTGCAGGGTACTCTCTGCTTTGGCTCTTGGTATGGACAACAATCATGGGAGGGCTGCTTCAAATCCTTTCGGCCAGGCTTGGAGTCGCGACGGGGCGCCACCTGGCAGAATTGTGTAGGGAGGAGTATTCTAATTGGGCAAGGTATGTTCTATGGATCATGGCAGAGATGGCATTGATTGCTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTCTCAAGATCCTTAGCCATGGGCTTTTGCCCATTTGGGCTGGTGTGGTTATCACAGCCTTTGATTGTTTCTTCTTTTTGTTTCTTGAGAACTATGGAGTGAGGAAGTTGGAAGGTGTTTTTGCAGTTTTTGTTGGGACAATGGCATTTTCCTTTGCATGGATGTTCTTTGATACAAAGCCAAGTGAAGAAGAACTTATCAAGGGCATTTTGATCCCAAGAGTGTACTCAAAAACACTTCGCCAAGCTGTGGAACTCATAGGCTGTGTTATAACCCCACACAATGTCTTCCTCCACTCTGCACTGGTCCAGTCTCGCGAAATCGATATCCGGAACAAAGGCCAAGTCCAGGAGGCTCTAAACTACTACACGATCGAGTCCTCGATCGCTCTCATCATCACACTGGTGATCAACCTCTTTGTGATGACAGTTTTTGCCAGAGTGTTCTATGGAACAGAACAAGCCAATGGAATAGGACTAGTGAATGCAGGGCAATTCCTTCAAGAAAAATATGGAGGAGGATTGTTCCCAATTTTATACATATGGGGAATTGGTTTGTTAGCAGCAGGACAAAGCAGCACAATTACAGGAACATATGCAGGACAATTCATAACTGAAGGGTTCTTGAAACTGAACATAAAGAAGTGGTTAAGGTCATTGATTACTAGAAGCTGTGCTATTGTTCCAACAATGATAGCTGCTATAGTTTTTAACACATCAGAGAGTTCATTGGATACTATGAATGAATGGCTGAATGTGGTTCAGTCAGTTCAGATTCCTTTTGCACTCATTCCACTTCTTACATTGGTGTCTAAACAAGAGGTCATGGGTACCTTTAGAATAGGCCCTATTGTAGAGAGGGTTGCATGGTGTGTGGCTGTGCTTGTAATAATGGTGTATGGATACATGTTGTTAGGGTTCTTCCTCTCTGAAGTGAAGGGATTTCTGTTTGGTTTTATTGTATGCATTGGCTTTGTAGCATGGATATCATTCATTGCATATTTAGTTAAACATGGTGGAGCCCTCTCTTCCATATTCGTTAGGGCCCCTACTTCAAGAGGCTTTACCCTAGCTACTAACAACTAA 1656 0.4414 MSIQSQQQQSRSNKNQQFKDEEEDNKELLHSDSETIPLSSPFPPQSAVLDGDNAEFVYAAKDKVQIFDVESAGRSGTGSTVVPPFSWRKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLVWTTIMGGLLQILSARLGVATGRHLAELCREEYSNWARYVLWIMAEMALIAADIQEVIGSAIALKILSHGLLPIWAGVVITAFDCFFFLFLENYGVRKLEGVFAVFVGTMAFSFAWMFFDTKPSEEELIKGILIPRVYSKTLRQAVELIGCVITPHNVFLHSALVQSREIDIRNKGQVQEALNYYTIESSIALIITLVINLFVMTVFARVFYGTEQANGIGLVNAGQFLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRSLITRSCAIVPTMIAAIVFNTSESSLDTMNEWLNVVQSVQIPFALIPLLTLVSKQEVMGTFRIGPIVERVAWCVAVLVIMVYGYMLLGFFLSEVKGFLFGFIVCIGFVAWISFIAYLVKHGGALSSIFVRAPTSRGFTLATNN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc83g00018 551 MobiDBLite consensus disorder prediction 15 31 - -
Stsc83g00018 551 Hamap Divalent metal cation transporter MntH [mntH]. 76 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 PRINTS Natural resistance-associated macrophage protein signature 199 218 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 PRINTS Natural resistance-associated macrophage protein signature 408 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 PRINTS Natural resistance-associated macrophage protein signature 224 245 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 PRINTS Natural resistance-associated macrophage protein signature 442 461 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 PRINTS Natural resistance-associated macrophage protein signature 380 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 PRINTS Natural resistance-associated macrophage protein signature 273 296 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 PRINTS Natural resistance-associated macrophage protein signature 169 195 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 17 527 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 Pfam Natural resistance-associated macrophage protein 111 472 IPR001046 GO:0016020|GO:0030001|GO:0046873
Stsc83g00018 551 NCBIfam Nramp family divalent metal transporter 95 464 - -
Stsc83g00018 551 MobiDBLite consensus disorder prediction 1 44 - -
Stsc83g00018 551 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 88 466 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc83g00018 Stsc-Chr83 96131 99001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc83g00018 22 528 Inorganic Solute Cotransporters AT1G47240 70.611 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc83g00018 K21398 - gmx:100801411 890.182