Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc83g00011 ATGGCTGAAGCACTTATTGTTGGAGCTTTAGTTAATGGCTTGGCCAACGTTGTTATTGACAGGCTCCTTTCACCTGAGTTTGTCAACTTGGTGGTGGGCAAGAAGCTGAACAAGAAGCTGATTGACAGGCTGAAGACTGCTATCTTGGCTGCCAAAGCTCTGGCTGCTGATGCTGAGCACAAGCAGTTTGGAGACCAACTTGTGAGGGAATGGCTTGATAGTCTCAGGGATGCTCTCTACACTGCTGATGACTTGCTGGATCGTGTCTTCACCAAAGCTCAAATTCGCAGCAAGGCACATATTCATCTTCCAAGCTTCCTTCATTTGTCTGATAGGAAGATGGTGACTAAGATAGAAGATGTGATTGAAAGAATTGAAGATCTTGAGAGACGCAAAGATATCCTTGGTCTCAGAGTCGTTCAAATGGGTAGCTCCTCATCATGGAGACCACCCCCGTCCACTTCTCTTGAAAGGGGGACTGTCTATGGCAGGGATGATGACAAGCAGGCATTAATGAAGATGCTAAATGACAACAATGATCATGACTTGTCTGTCATCTCTATTGTTGGTATGGGCGGGGTTGGTAAAACTACTTTGGCACAATGGCTGTACAACAATGGGGATTTGATGAAGGGGTTTGATCTGAAAGCTTGGATTTGTGTTTCTGATAATTTTGATGTCATTGAGACTACCAAGAATGTTATAAAGGAGATCAATGAAGGTGTTTGTAATCTTGACAGCTTCAATTTACTTCAACGAGATTTGAAGGAAAAACTGTCACAGAACAAGTTCTTCATTGTTTTGGACGATGTTTGGAGTGAAGATGGTGACAAGTGGAATACCTTTATTACTCCTTTTCAACATGGGAAAAAGGGTAGCATTCTTCTTCTAACCACCCGCAGCAAAAATGTTGGTCCAACAGTCCAAAATTATAACTCTTACCCTCTCGAGGGGTTATCAGATGATTTTTGCTGGTCTATTTTTGCGGCCAATGCATCCTTTCCTGAATTAAATGGGAGTTCAGAATTGGAAGAAATTGGTAGAAAGATTGTCCAGAGGTGTGATGGCTTGCCATTAGCTGCAGAAACACTTGGACGCTTGTTGCACTCGGAGCATCGTGTTGAAGAATGGAAGAAAATTCTATCGAGTGACATTTGGGAATTTCCTTTGGCAAACTGTAAGATTGTTCCTGCTCTGTTGATAAGTTACTATCATCTGCCTGCTCATTTAAAGCGCTGCTTTGTTTATTCTTCATTGTATCCAAAAGATCATCAATTTGATAAAAATAAATTGATTTTGCTGTGGATGGCTGAAGATCTTTTGCGACCACCAAAGAGGGGAGAGACTTTAGAAGAAGTTGGTTGCGAATGTTTTGATGAGTTGGCTTCAAGACTATTTTTCAAGCAGGTCAGAAATGATGATGAGAAGTGTTTCGTGATGCATGATCTCATGCATGACTTGGCAACTTTTCTTGCTGGAAAATTCTTTTGTAGATTATCAGAACTTGGTGAAAAGGAAGAGATGGGGATTCTAACTCGTCATTTGTTATACGAGCATCCAATCTCCGAAGAAACCTATTCCTCTAGTAAAATAGAATCTTTGAGGACATTCTTGAATACGGATCATGGTCAGAAAGAAAGCACAAAAATAACATGTGACATGTTGTCAAAGAATAAATATTTGAGAGTGTTATCCTTTCATTACCACAGCATATCTCCTGATTCAATTGCTAAATTGATCCACCTACGTTATTTGGATCTCTCTTGGAGTAAGTTTGAGGTCTTGCCACAGTCATTATGTAACTTGTGCAATCTACAAACTTTGAAGTTAAACTGGTGTTCTTTCCTCACTATGCTGCCTAGTAGCCTAGGTGAACTGATCCACTTGCGCTATTTGAATCTGTCTGGAAGTGCTATTAAGACATTGCCGGAGTCAATGTGCAAGTTGTCTTGTTTGCAAACATTAAAGCTAAAACATTGTTCACAGCTGACTATGCTGCCCAATGGCATGTATAATCTTGTGAATTTGCGGCATCTTGATATAAGGGGTACTCCTCTAAAAGAAATGCCAAAAGGAATGAGCAAATTGAAACATTTGCAGATTTTAAGCTACTATATCGTAGGCAAGCAAGAAGACAATGGAATCCAAGAGTTAGGAGGGCTTTTAAATCTTCATGGTTCGTTTGCGATTCAGAAATTGGAAAATGTTGCTGATGCCAATCAGGCAAGGAGAGCAAAGATAATAGATAAGAAGCACATTGACGAGTTATTGCTGAAATGGTCTTCAGGTGATGATATGGTTTCAGATATACAAATTGAAGGAGATGTACTCTACAGCTTGCAACCGTACACTGGCTTGAAAGAGTTGACAATCAAGGGATACAAGGGTATAATAATTCCAAATTGGTTGGGGCATTGTTCCTACCAAAATATGACAAAGGTATCTCTAAAGTCTTGCAAGAATTGCCGCAAGCTGCCTTCACTTGGACAGCTGCCATCTTTGAAGTCTCTAAGAATTGAAGGTTTTAGTGAGCTTAAGTGCATTGGTGATGAGTTTTACAAGAACGAAGATGATTGTACTTTGCATATTGCATCTTTTCCCTCACTAGAGATATTAGAATTTGAAGATATGCCATGTTGGGAGCTGTGGAGCTTACCTGGCTCAGAAGCTTTTCCTCAGCTTAAGAAGCTTAAAATAACAGAATGTCCAATGTTAAAGGGAGATATGGTTAAGCAGATATTAATGAGAATCTTTTCTTCGTCATTGGATGCTTCAAAAGTCTGCAAACTGTATATGATTAAATTTGATGAATCCGGCAACTATACAGATATGTCACTCGAAGGGGATAGTTTATCACTCATGGGATGTGAATGGTTGGAGGACACTACATTTATGATAACTATCATCCACCATCTAACTTCCCTCCAAGAAATAGAAATCTATGGTTTTTTGTCCGCTGTATCCTTTCAAGTCAATTGTTTACCCAAATCTTTACAAAAGATGGAAATCTGGAAATGCAGAAAAGTGGAATTCCCGGAGCACAAGTATGATTTGGTAGAGCTACAAATAAAAGAAAGCTGCAGTTCACTGGTCTCACTGTCGCTGAATGCCTTTCCCAATCTCAAGACTCTTTTGATAGAAGAGTGTTCAAATCTGGAATCAATTTCAATGTCAGAGCCACCACACACTGCTCTTCAATGCCTCACCGTCAGATGGTGCCCCAAATTAGTGTCATTGCCGCGTAAGATGGATACACTTGTCCCAAATTTACAGTCTCTCGACATACAATATTGCCGAGGAATTTGTAGGTTTGTAGAGGGTGGTTTGCCACGTAACTTGGAAAAGCTTTGTATGAGAAGTTACGAGGGACTATTAAGGGGTCTGTCATCCATGGGAAAATTGGAAGCCCTCACGCATCTCGTGATTAACGGTGGTGACTGTGAGAGAATAATAAAGTCATTCCCAGAGGTTGGTTTGCTGCCTCAACTTCCCTCCCTTACCACTCTTGAGATCAGTTGGTTTCGTAATCTGGAGACGTTGGAGTGCAATGAGCTTCTCCGCCTCACCTCCCTCCAACATTTTTACATTAAATACTGTGATAAGCTGGAGAATATGGCAGGAGATAAGCTGCCTTCTTCTCTCCTACTACTTCAAATTGAATACTGTCCTCTGCTGGGAGTACACGGCAGGAATGTTTGGCCCAAAATTGAACACATCCCCATCATTGAAGTTGACACAGAGGAGAGGCTGTACAGATAG 3759 0.407 MAEALIVGALVNGLANVVIDRLLSPEFVNLVVGKKLNKKLIDRLKTAILAAKALAADAEHKQFGDQLVREWLDSLRDALYTADDLLDRVFTKAQIRSKAHIHLPSFLHLSDRKMVTKIEDVIERIEDLERRKDILGLRVVQMGSSSSWRPPPSTSLERGTVYGRDDDKQALMKMLNDNNDHDLSVISIVGMGGVGKTTLAQWLYNNGDLMKGFDLKAWICVSDNFDVIETTKNVIKEINEGVCNLDSFNLLQRDLKEKLSQNKFFIVLDDVWSEDGDKWNTFITPFQHGKKGSILLLTTRSKNVGPTVQNYNSYPLEGLSDDFCWSIFAANASFPELNGSSELEEIGRKIVQRCDGLPLAAETLGRLLHSEHRVEEWKKILSSDIWEFPLANCKIVPALLISYYHLPAHLKRCFVYSSLYPKDHQFDKNKLILLWMAEDLLRPPKRGETLEEVGCECFDELASRLFFKQVRNDDEKCFVMHDLMHDLATFLAGKFFCRLSELGEKEEMGILTRHLLYEHPISEETYSSSKIESLRTFLNTDHGQKESTKITCDMLSKNKYLRVLSFHYHSISPDSIAKLIHLRYLDLSWSKFEVLPQSLCNLCNLQTLKLNWCSFLTMLPSSLGELIHLRYLNLSGSAIKTLPESMCKLSCLQTLKLKHCSQLTMLPNGMYNLVNLRHLDIRGTPLKEMPKGMSKLKHLQILSYYIVGKQEDNGIQELGGLLNLHGSFAIQKLENVADANQARRAKIIDKKHIDELLLKWSSGDDMVSDIQIEGDVLYSLQPYTGLKELTIKGYKGIIIPNWLGHCSYQNMTKVSLKSCKNCRKLPSLGQLPSLKSLRIEGFSELKCIGDEFYKNEDDCTLHIASFPSLEILEFEDMPCWELWSLPGSEAFPQLKKLKITECPMLKGDMVKQILMRIFSSSLDASKVCKLYMIKFDESGNYTDMSLEGDSLSLMGCEWLEDTTFMITIIHHLTSLQEIEIYGFLSAVSFQVNCLPKSLQKMEIWKCRKVEFPEHKYDLVELQIKESCSSLVSLSLNAFPNLKTLLIEECSNLESISMSEPPHTALQCLTVRWCPKLVSLPRKMDTLVPNLQSLDIQYCRGICRFVEGGLPRNLEKLCMRSYEGLLRGLSSMGKLEALTHLVINGGDCERIIKSFPEVGLLPQLPSLTTLEISWFRNLETLECNELLRLTSLQHFYIKYCDKLENMAGDKLPSSLLLLQIEYCPLLGVHGRNVWPKIEHIPIIEVDTEERLYR 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc83g00011 1252 Coils Coil 41 61 - -
Stsc83g00011 1252 SMART LRR_typ_2 579 602 IPR003591 -
Stsc83g00011 1252 SMART LRR_typ_2 673 696 IPR003591 -
Stsc83g00011 1252 SMART LRR_typ_2 626 649 IPR003591 -
Stsc83g00011 1252 Gene3D - 318 401 IPR042197 -
Stsc83g00011 1252 Gene3D - 154 313 IPR027417 -
Stsc83g00011 1252 PRINTS Disease resistance protein signature 185 200 - -
Stsc83g00011 1252 PRINTS Disease resistance protein signature 258 272 - -
Stsc83g00011 1252 PRINTS Disease resistance protein signature 354 368 - -
Stsc83g00011 1252 PRINTS Disease resistance protein signature 647 663 - -
Stsc83g00011 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 416 IPR027417 -
Stsc83g00011 1252 Gene3D - 402 490 IPR036388 -
Stsc83g00011 1252 Gene3D - 13 134 - -
Stsc83g00011 1252 FunFam Probable disease resistance protein At1g63360 403 490 - -
Stsc83g00011 1252 Pfam NB-ARC domain 165 382 IPR002182 GO:0043531
Stsc83g00011 1252 SUPERFAMILY L domain-like 479 1005 - -
Stsc83g00011 1252 Coils Coil 118 138 - -
Stsc83g00011 1252 Gene3D Ribonuclease Inhibitor 949 1239 IPR032675 -
Stsc83g00011 1252 Gene3D Ribonuclease Inhibitor 527 931 IPR032675 -
Stsc83g00011 1252 Pfam Rx N-terminal domain 7 97 IPR041118 -
Stsc83g00011 1252 FunFam Probable disease resistance protein At1g61300 150 312 - -
Stsc83g00011 1252 SUPERFAMILY L domain-like 983 1226 - -
Stsc83g00011 1252 PANTHER DISEASE RESISTANCE PROTEIN RP 615 902 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc83g00011 Stsc-Chr83 54972 58979 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc83g00011 182 848 WRKY Transcription Factor Family AT5G45050 24.212 4.13e-16 82.4