Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc83g00008 ATGCTGCCTAGTAGCCTAGGTGAATTGATCCACCTGCGCTATTTGGATGTCTCTAGAAGTGCTATTAAGACATTGCCGAAGTCACTCTGCAAGTTGTCTCATTTGCAAACATTAAAGCTAGAAGATTGTTCAAAGCTGACTATGCTGCCCAATGGAATGTGTAATCTTTTGAATTTGCGGCATCTTGATATAAGGGGTACTCATCTAAAAGAAATGCCAAAAGGAATGGGCAAATTGGGACAGTTGCACATTTTAAGATACTATGTCATGGGCAAACAAGAAGACAATGGAATCCAAGAGTTAGGAGGGCTTTTAAAGCTCCATGGTTCGTTTGCGATTCAGAAATTGGAGAATGTTACTGATGCCAATCAGGCAAGGAGAGCAAAGATAATAGATAAGAAGCACATTGACGAGTTATTGCTGGAATGGTCTTGGAGGGATGATATGGTTTCAGACATAAAAATTGAAAGCCATGTACTCGACAGCTTGCAACCGCACACTGGCTTGAAAGAGTTGACAATCAAGGGATACAAGGGTATAATATTTCCAAATTGGTTGGGGCATTGCTCCTACCAAAATATGACAAATGTATCTCTAAAGTTTTGCAAGAATTGCGGCAAGCTGCCTTCTCTTAGACAGCTACCATCTCTTAAGTCTCTAAGAATTGAAGGTTTTCAGCTCAAGTATATTGGTGATGAGTTTTACAAGAATGAAGACCATGGTACTTTGCATACTGTTCCTTTTCCCTCACTTGAGACATTGTATTTTGGTAAGATGCGATATTGGGAGGTGTGGAACTTACCTGGCTGCTCTGAAGCTTTCCCTCAGCTTAAGAAGCTTGAAATAAGAGAATGTCCAAAGTTAAAGGAAGATATGTCTGCACTTATGGCAAAGATCATCCCCCATCTAACTTCCCTCCAAGAAATAAGGATTGATGGTTTTATATCCACTGTATCCTTTCCAGCCAATTGTTTACCCAAATCTTTACAGAAGTTGGAATTCTGGCAGTGCACAAGACTGTCCTCATTGTCATTGGATGCCTTTCCTAATCTCAAAGATCTCAGTATATTATGGTGTTCAAATCTGGAATCAATTTCAATGTCAGAGCCACCACACACTGCTCTTCAAAGTCTCACCATCAGTGGATGCCCCAAAGTAGTGTCAATAACAGGAGGACTGGCCGCACCCAACTTAATTCATCTCGATAGGGTGGTTTTGCCGCCTAACTTGGTAAAGCTTTGTATGAAAGGCTACGAGGGACTATTAAGGGGTCTGTCATCCATGGCAAAATTGGAAGCTCTCATGATTTACGGTTGGGGCTGTGGGAGAGTGAAGTCATTCCCAGAGGTGGGTTCGCTGCCTCACCTTCCCTCCCTTACCACTCTTGAGATCAATGGGTTTGATAATCTGGAGACGTTGGATTGCAACGAGCTTCTCCGTCTCTCCTCCCTCCAACATTTACACATTTCATCGTGTTGGAAGCTGTAG 1488 0.4227 MLPSSLGELIHLRYLDVSRSAIKTLPKSLCKLSHLQTLKLEDCSKLTMLPNGMCNLLNLRHLDIRGTHLKEMPKGMGKLGQLHILRYYVMGKQEDNGIQELGGLLKLHGSFAIQKLENVTDANQARRAKIIDKKHIDELLLEWSWRDDMVSDIKIESHVLDSLQPHTGLKELTIKGYKGIIFPNWLGHCSYQNMTNVSLKFCKNCGKLPSLRQLPSLKSLRIEGFQLKYIGDEFYKNEDHGTLHTVPFPSLETLYFGKMRYWEVWNLPGCSEAFPQLKKLEIRECPKLKEDMSALMAKIIPHLTSLQEIRIDGFISTVSFPANCLPKSLQKLEFWQCTRLSSLSLDAFPNLKDLSILWCSNLESISMSEPPHTALQSLTISGCPKVVSITGGLAAPNLIHLDRVVLPPNLVKLCMKGYEGLLRGLSSMAKLEALMIYGWGCGRVKSFPEVGSLPHLPSLTTLEINGFDNLETLDCNELLRLSSLQHLHISSCWKL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc83g00008 495 Gene3D Ribonuclease Inhibitor 296 403 IPR032675 -
Stsc83g00008 495 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 325 492 - -
Stsc83g00008 495 SMART LRR_typ_2 214 237 IPR003591 -
Stsc83g00008 495 SMART LRR_typ_2 9 32 IPR003591 -
Stsc83g00008 495 SMART LRR_typ_2 56 79 IPR003591 -
Stsc83g00008 495 SUPERFAMILY L domain-like 409 492 - -
Stsc83g00008 495 Gene3D Ribonuclease Inhibitor 405 495 IPR032675 -
Stsc83g00008 495 SUPERFAMILY L domain-like 2 388 - -
Stsc83g00008 495 Gene3D Ribonuclease Inhibitor 1 295 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc83g00008 Stsc-Chr83 46700 48444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc83g00008 2 87 WRKY Transcription Factor Family AT4G12020 37.931 9.08e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc83g00008 - - aip:107622599 549.666