Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc83g00002 ATGCACCTCAAGAAACTCGTTCAACTGAACTTAAAAGGCTGCAAAAGTCTCAAAGCTCTTCCAGCTAAAATGGAGATGAGTTCATTAAAGGTTTTAAATCTTTCTGGTTGCTCAAAACTGAACACTGCCCCAGATTTTGGGAATTGCATGAGACATCTATCAGAGCTTTCTTTGGATGGAACTGCTGTAGCAGAGCTACCCTCATCACTAGGATGTCTGGTTGGACTTGTTCATTTGCATTTAATGAATTGTGAGTACCTTGTGTGCCTTCCGGATACCATGCATAAGTTGAAGTCCCTCAAAGTTCTTAATGTTTCTGGTTGCTTGAAGCTCAGTAGCTTGCCAGAGTGCCTACTGGAACTGAAGTATTTGGAAGAACTTAATGCGAGCAATACTGCCATTGAAGAACTACCTTCATTTTTAGGGTATCTAGAAAACCTCAAATCCATCCCTTTTGAAAAGTTTGGATTTAATTATTGCAATCTACTTGCTGAATCAATACCAGATGGTTTTTGTGGCTTACCTTTTCTGAGGGATTTAGATCTTTCTGGCAACAACTTTGTTAACCTACCAAGCGACATTTCCAAACACTCTACACTTGAATCTCTTTGTCTAAACTCGTGCAAAAAGCTTCAGTCATTGCCTGAGCTTCCATTAAGCATAAGAAAAATAGATGCAAGCAACTGTGCCTCATTGGTAACTTCCACATTCCATCCATCTAGCGAATGCAACATTTTTGCATCACCTGTACAATGGCACTTACCAAGGGAACAGAAGAGCCTCCTTAAGGGGCTTTCCTTTCCGATGAAACCATTCGACATGCTTATCACTGGCAATGAAATTCCATCATGGTTTGCCCCTCAAAAGTCCTCTTTCTTTGCAGAAATACCATATCTTCACCATTATCCTCCAATTGAATGGGTTGGATGTGCTGTGTGTTTCTTGCTAGTAAGTGATGCAAATCCGCCTAGGATGTGTCATCATAAAATTACTTGTTCATTCGGAACACGCACATTGTTAGAGTCCAGCGAGGTAGTACCTGATGAATATGATTGGGCATACGATTGGAGTGACGAGCCTTGGAGAATCAGCAGGAATCTTCCTCCTATGGAGCCAAAACAACCTCACGTTTACATTCTCTTTTTGCCCTATTCACTCAGTGAAGAATTCCTTGATAGGTCTAAAAGTCATGGCTTTGAATTGATGAGTCGTTGA 1215 0.4091 MHLKKLVQLNLKGCKSLKALPAKMEMSSLKVLNLSGCSKLNTAPDFGNCMRHLSELSLDGTAVAELPSSLGCLVGLVHLHLMNCEYLVCLPDTMHKLKSLKVLNVSGCLKLSSLPECLLELKYLEELNASNTAIEELPSFLGYLENLKSIPFEKFGFNYCNLLAESIPDGFCGLPFLRDLDLSGNNFVNLPSDISKHSTLESLCLNSCKKLQSLPELPLSIRKIDASNCASLVTSTFHPSSECNIFASPVQWHLPREQKSLLKGLSFPMKPFDMLITGNEIPSWFAPQKSSFFAEIPYLHHYPPIEWVGCAVCFLLVSDANPPRMCHHKITCSFGTRTLLESSEVVPDEYDWAYDWSDEPWRISRNLPPMEPKQPHVYILFLPYSLSEEFLDRSKSHGFELMSR 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc83g00002 404 SMART LRR_typ_2 174 197 IPR003591 -
Stsc83g00002 404 SMART LRR_typ_2 50 73 IPR003591 -
Stsc83g00002 404 SMART LRR_typ_2 97 121 IPR003591 -
Stsc83g00002 404 Gene3D Ribonuclease Inhibitor 1 47 IPR032675 -
Stsc83g00002 404 Gene3D Ribonuclease Inhibitor 48 245 IPR032675 -
Stsc83g00002 404 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 26 148 - -
Stsc83g00002 404 SUPERFAMILY RNI-like 3 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc83g00002 Stsc-Chr83 8385 9767 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc83g00002 76 203 WRKY Transcription Factor Family AT4G12020 34.247 9.88e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc83g00002 - - ahf:112733264 524.242