Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc839g00003 ATGGCATCCCAGCAACCAGAATTTGAGCATCCTAGGAAGGCATTCGGATGGGCAGCCAGGGATACTTCTGGTTTTCTCTCTCCTTTCAATTTCTCTAGAAGGAAAACAGGAGAGAAAGATGTTGCATTAAAAGTGCTGTACTGTGCGATATGCCACTCAGACCTGCATATGTTGAAAAACGAGTGGGGCAATGCCATATATCCTATGGTCCCTGGGCATGAAGTAGTTGGCGTAGTAACAGAGGTGGGAAGCAAGGTAGAAAAATATAAAGTTGGGGACAAAGTAGGCATTGGATGCTTGGTTGAATCGTGTCGTTCTTGCCAGAACTGTGTTGAAGATCTTGAGAATTATTGCCCAACAAATGTTATGACATATGGCGCCAAATACATTGATGGTACTATCACATATGGAGGCTACTCTGATTCAATGGTAGTTGATGAACACTTTGTCATTCGAATTCCTCAAGGCTTGCCTCTTGATGTTGCTGCTCCTCTCCTTTGTGCTGGGATCACGGTTTATAGTCCACTTAGATATTTTGGGCTTGATAAGCCCGGTTTGCATCTGGGTGTTGTTGGGCTTGGTGGGCTTGGCCATGTGGCGGTCAAATTTGCTAAAGCTTTCAGTGCTAAGGTTACTGTCATCAGCACGTCACCTAATAAAAAGGATGAAGCAATCAAAATTTTGGGAGCTGATTCATTTTTGTCAAGCCGTGACCAAGATCAAATGCAGGCAGCAATGGAAAGCATGGACGGTATTATTGATACGGTATCTGCTGTTCATCCCATCGTATCTCTGATTGGTTTACTGAAATCTCATGGAAAACTAGTAATGGTTGGAGGACCAGCGAAACCGTTAGAGCTACCAGTCTTTCCTTTGCTTAAGGGGAGAAAGATTGTAGCTGGTAGTCTGATTGGAGGGTTGAAGGAGACGCAAGAAATGATTGATTTTGCAGCTAAACATAATGTGAAGCCTGAGATTGAGGTTATTGCGATTGATTATGTCAACACTGCAATGGAACGCCTCGCCAAAGCAGACGTCAAGTATCGCTTTGTCATTGACATCGCCAACACACTAAAACCAACCTCTTAA 1089 0.4371 MASQQPEFEHPRKAFGWAARDTSGFLSPFNFSRRKTGEKDVALKVLYCAICHSDLHMLKNEWGNAIYPMVPGHEVVGVVTEVGSKVEKYKVGDKVGIGCLVESCRSCQNCVEDLENYCPTNVMTYGAKYIDGTITYGGYSDSMVVDEHFVIRIPQGLPLDVAAPLLCAGITVYSPLRYFGLDKPGLHLGVVGLGGLGHVAVKFAKAFSAKVTVISTSPNKKDEAIKILGADSFLSSRDQDQMQAAMESMDGIIDTVSAVHPIVSLIGLLKSHGKLVMVGGPAKPLELPVFPLLKGRKIVAGSLIGGLKETQEMIDFAAKHNVKPEIEVIAIDYVNTAMERLAKADVKYRFVIDIANTLKPTS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc839g00003 362 Pfam Zinc-binding dehydrogenase 195 318 IPR013149 -
Stsc839g00003 362 Gene3D - 17 354 - -
Stsc839g00003 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 323 IPR036291 -
Stsc839g00003 362 SUPERFAMILY GroES-like 22 185 IPR011032 -
Stsc839g00003 362 FunFam Cinnamyl alcohol dehydrogenase 168 324 - -
Stsc839g00003 362 FunFam Uncharacterized protein 17 167 - -
Stsc839g00003 362 CDD CAD1 15 353 IPR047109 GO:0016616
Stsc839g00003 362 PANTHER ALDEHYDE REDUCTASE 6 357 IPR047109 GO:0016616
Stsc839g00003 362 SMART PKS_ER_names_mod 18 352 IPR020843 GO:0016491
Stsc839g00003 362 Gene3D - 168 324 - -
Stsc839g00003 362 FunFam Putative cinnamyl alcohol dehydrogenase 6 325 354 - -
Stsc839g00003 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 72 86 IPR002328 GO:0008270|GO:0016491
Stsc839g00003 362 Pfam Alcohol dehydrogenase GroES-like domain 39 152 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc839g00003 Stsc-Chr839 18238 20426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc839g00003 12 361 Monolignol Biosynthesis Gene Families AT4G37990 71.143 2.66e-175 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc839g00003 K23232 - gmx:100816901 576.244