Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc832g00003 ATGAATTTCCCTGATAATATACAAACATTCACGATGTCACCGACGAGATTCGCATCAACCGATGCCATTGATGTGAGGCTTCTTCAACTTCCAATGAACAATGAACCATTGGACCCGCATTCGCATTTAGACCTAGCCCCTATGGCCAAGAGGCCAAGAACCTCAATGGAGAACCTCAATGATTCGCCAAGGACCATGATGAACACTGCAAACCCTGGAGGGAATAAAGGAACAAGCCACATTTTCTACAAGACCAGAATCTGCGCAAAGTTCAGGCTTGGAACCTGTAGGAACGGCGAGAACTGCAACTTTGCCCACGGCGCCGACGATGTGAGGCAGCCGCCACCTAACTGGCAAGAAATTGTTGGGTTGAGAGGCAATGACGAAAGGTCTTCAGGGAATTGGGATGATGATCACAAGATTATCCATAAGATGAAGCTATGCAAGAAGTTTTACAATGGTGAGGAGTGTCCTTATGGTGAGAGGTGCAGTTTCCTTCATGAGGACCCTGGAAAGTTCAGGGAGGATTCTAGTTCTGCAAGATATAGGGATAGGGAGAGCTCAGTGATAAGCATAGGGACTAATGGTTCACCACCAAAGGGATATGGTGGTGGTGATGGTGGTGGCTCTAGGTGTAATGATTCAGAAGTTGGTGGTGGTAATAATAGGGCTATGAACAATGGTAATGGTGGTGTGGGTGGGTTGAATGTTTCAAGGGGTTCTTCCAAGGGTACTTATTGGAAGACTAAGCTTTGTATCAAGTGGGAGACTACAGGGCACTGTCCTTTTGGCGGGGACTGTCACTTTGCCCATGGACAAGCAGAGTTGCAAGCTCCCGGTGGACGCACTGAAGCAGAAGTTGTTGGAGCCATTTCAGCTTCAACAAAGGCAACCGTTCCAAATTTACCAAATGTTATATCATCAGTTCATGCCAGTGATGTGCACCCCAGCAACACAGCAAGTGTACCTCCAGCGAATGAAGATGGGCAGGGTACCAAGTCTCTGCTCAAGTGGAAAGAATTCAAGAAGATCAATCGTATTTACGGCGATTGGCTTGATGATTTCCCACTTGTGCACAACTTGCCAAGTAGAGTAGAGACCTGA 1104 0.471 MNFPDNIQTFTMSPTRFASTDAIDVRLLQLPMNNEPLDPHSHLDLAPMAKRPRTSMENLNDSPRTMMNTANPGGNKGTSHIFYKTRICAKFRLGTCRNGENCNFAHGADDVRQPPPNWQEIVGLRGNDERSSGNWDDDHKIIHKMKLCKKFYNGEECPYGERCSFLHEDPGKFREDSSSARYRDRESSVISIGTNGSPPKGYGGGDGGGSRCNDSEVGGGNNRAMNNGNGGVGGLNVSRGSSKGTYWKTKLCIKWETTGHCPFGGDCHFAHGQAELQAPGGRTEAEVVGAISASTKATVPNLPNVISSVHASDVHPSNTASVPPANEDGQGTKSLLKWKEFKKINRIYGDWLDDFPLVHNLPSRVET 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc832g00003 367 FunFam Zinc finger CCCH domain-containing protein 39 139 171 - -
Stsc832g00003 367 SUPERFAMILY CCCH zinc finger 80 113 IPR036855 GO:0046872
Stsc832g00003 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 167 IPR000571 GO:0046872
Stsc832g00003 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 107 IPR000571 GO:0046872
Stsc832g00003 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 273 IPR000571 GO:0046872
Stsc832g00003 367 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Stsc832g00003 367 Gene3D - 74 113 - -
Stsc832g00003 367 Gene3D - 240 278 - -
Stsc832g00003 367 Gene3D - 140 174 - -
Stsc832g00003 367 PANTHER CCCH ZINC FINGER/TIS11-RELATED 236 279 IPR045877 GO:0003729
Stsc832g00003 367 MobiDBLite consensus disorder prediction 174 226 - -
Stsc832g00003 367 SUPERFAMILY CCCH zinc finger 245 277 IPR036855 GO:0046872
Stsc832g00003 367 ProSiteProfiles Zinc finger C3H1-type profile. 246 274 IPR000571 GO:0046872
Stsc832g00003 367 SUPERFAMILY CCCH zinc finger 142 169 IPR036855 GO:0046872
Stsc832g00003 367 FunFam Zinc finger CCCH domain-containing protein 241 278 - -
Stsc832g00003 367 ProSiteProfiles Zinc finger C3H1-type profile. 82 109 IPR000571 GO:0046872
Stsc832g00003 367 FunFam Zinc finger CCCH domain-containing protein 77 113 - -
Stsc832g00003 367 SMART c3hfinal6 82 108 IPR000571 GO:0046872
Stsc832g00003 367 SMART c3hfinal6 246 273 IPR000571 GO:0046872
Stsc832g00003 367 SMART c3hfinal6 142 169 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc832g00003 Stsc-Chr832 11464 13517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc832g00003 248 277 C3H Transcription Factor Family AT1G68200 60.000 2.02e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc832g00003 zf-CCCH 2.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc832g00003 - - gmx:100793865 434.106