Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc82g00009 ATGAGGAATACAACACATTTTCAAGTTCCGTCACCTCGTAACTTATTTGCAAGGGATAGTACTTCAGTTCCTCAAGTAAATTATGGTAAATCCGTTAACAAAGATCTAGATGGAGAACTAGACGATGGATACAGTTGGAGGAAATATGGAGAGAAAGAGGTGAAAAGAGGCGAAAATCCCCGGTATTATTACATGTGCACACATCCAAATTGCACAATGAAGAAGAAAGTTGGAAGAAACTCGAATGGAGACGTCATCGAAGTTATTTACAAGGGAAGCCATAACCATCCCAAGCCTTGGAAGCCTCTTGGAAAATTTCAATCGCTTGATGCACCTACATCACTCACCAACCTGGGGAATATGAGTCAACAATCCCCAGGAGAGCAAGATCTTGCTCGAATTATCGAGCGAGCATCTCGAATAACAAGTCATCCTAGAGGAGGCGATGAAGATCAACTTGGAGCTCACGCCAAAAGATTGAAAGGAGTGAATGAAGTGTATAGCTATTCCTTTTATCAAATTGGGGGAAAAGCTATCAAGGAACCCAGAGTTATAGTTCAAACTACAACTGAAATTGATATTCTTGATGATGGCTATAGGTGGAGGAAATATGGTCAGAAACTTGTCAAGGGAAACCCAAACCCAAGGAACTACTACAAGTGTGTGAGCGAAGGTTGTAATGTGAGGAAACATGTGGAGAGAGCAGCACATGACATGAAGTGTGTGCTCACAACCTATGAAGGCAAACACAACCATCAAGTTCCTGAACAACCATCCTTTCCAACTCAACACATATCTTTTACTCCCTTAACATCACTCAACAACTTTGCAGCTACATCATCACCAAGTGTATCAAACAATAATCAAAATTCTGAATCAAATCAACAAACTAATAATCTTCCTTTGAGGATTGGAGGAATTCCAAATTTTGGTAGGTCACTGATTGGTGGTACTACTTCATATGCCAATAATGAGGGACCAACCTCAAATAATAATGCTACTGCAAAATCAAACAAATGA 1020 0.4 MRNTTHFQVPSPRNLFARDSTSVPQVNYGKSVNKDLDGELDDGYSWRKYGEKEVKRGENPRYYYMCTHPNCTMKKKVGRNSNGDVIEVIYKGSHNHPKPWKPLGKFQSLDAPTSLTNLGNMSQQSPGEQDLARIIERASRITSHPRGGDEDQLGAHAKRLKGVNEVYSYSFYQIGGKAIKEPRVIVQTTTEIDILDDGYRWRKYGQKLVKGNPNPRNYYKCVSEGCNVRKHVERAAHDMKCVLTTYEGKHNHQVPEQPSFPTQHISFTPLTSLNNFAATSSPSVSNNNQNSESNQQTNNLPLRIGGIPNFGRSLIGGTTSYANNEGPTSNNNATAKSNK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc82g00009 339 Gene3D WRKY domain 30 100 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 Gene3D WRKY domain 182 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 MobiDBLite consensus disorder prediction 278 339 - -
Stsc82g00009 339 FunFam WRKY transcription factor 57 181 255 - -
Stsc82g00009 339 ProSiteProfiles WRKY domain profile. 190 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 SMART WRKY_cls 195 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 SMART WRKY_cls 40 98 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 295 IPR044810 GO:0003700
Stsc82g00009 339 MobiDBLite consensus disorder prediction 278 303 - -
Stsc82g00009 339 MobiDBLite consensus disorder prediction 313 339 - -
Stsc82g00009 339 SUPERFAMILY WRKY DNA-binding domain 187 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 Pfam WRKY DNA -binding domain 41 97 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 Pfam WRKY DNA -binding domain 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 ProSiteProfiles WRKY domain profile. 40 99 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc82g00009 339 SUPERFAMILY WRKY DNA-binding domain 40 99 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc82g00009 Stsc-Chr82 79039 80567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc82g00009 40 99 WRKY Transcription Factor Family AT2G38470 54.839 2.99e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc82g00009 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc82g00009 K13424 - gmx:102666898 281.182