Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc826g00003 ATGGTTAGAACACCTTCTTGTGACAAGAGTGGATTGAGGAAGGGTACTTGGACACCTGAGGAAGATAGGAAGTTAATTGCCTATGTTACTAGGTATGGTAGCTGGAATTGGCGCCAATTGCCTAGGTTTGCAGGACTTGCTAGGTGTGGGAAGAGTTGTAGACTGAGGTGGATGAATTACCTAAGGCCCAATCTCAAAAGAGGGAACTTCACCCAACAAGAAGAAGCTTGCATAATCAAATTGCATTCTAAACTTGGAAATAGATGGTCAGCCATTGCTGCAGAGCTGCCAGGGAGAACTGATAACGAAATCAAGAACCATTGGCACACTACACTCAAGAAGCGCGTTCAAACCAATAATGAAGAATCCAAAACCACCAAATCCAAACCCAAAGAAAAGGAAATGACTCCATTGGTACCTACCAATTCCCAGATCTCAGGAGAGGGAAACATTACTACTACTTCGCCATTGTCACCATTGTCCTCCTCAAGTGAACTCTCCTCCATAACTTCATGGGATAAAAGTCAAAATCTGGTTCTTGAAGATGAGGATTTCGCTTTTCTTGATGGAAGCTTCTGGACAGATGAACCGTATCTTGCTGAAATCTTGCATGAACAAGAAGAAGCAGTGGCAGCAACAGTGCCTAATAATAATAACAATGTGTTTGATCCTTGTGATGAAATCTCAGTAGCCAATAAGAATGAAGAGTTATTATCAGAATTATCATCCAACAACAGTTCATCATCATCAAATTTGGTTGATCTGGAGAAAGAGTTTGGGAGCTTCTTGATTGAACCAACAACAATAATGATGGAAAGTTTTTGGACCCAGCCATATGTGTCTGAATCTGCTGACGTGTCCCATATTCCATTCATGCCTCCATCATCTGAATACTTTACAACGCTGTGTGGGTCAGATCCTTGGAGCACTCAAAGTACTACTCATTTGTATGATCAACATCTTAGCTTATTCCAATGA 978 0.4131 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNLKRGNFTQQEEACIIKLHSKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRVQTNNEESKTTKSKPKEKEMTPLVPTNSQISGEGNITTTSPLSPLSSSSELSSITSWDKSQNLVLEDEDFAFLDGSFWTDEPYLAEILHEQEEAVAATVPNNNNNVFDPCDEISVANKNEELLSELSSNNSSSSSNLVDLEKEFGSFLIEPTTIMMESFWTQPYVSESADVSHIPFMPPSSEYFTTLCGSDPWSTQSTTHLYDQHLSLFQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc826g00003 325 Gene3D - 68 138 - -
Stsc826g00003 325 CDD SANT 69 112 IPR001005 -
Stsc826g00003 325 MobiDBLite consensus disorder prediction 113 163 - -
Stsc826g00003 325 CDD SANT 16 61 IPR001005 -
Stsc826g00003 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc826g00003 325 Coils Coil 238 258 - -
Stsc826g00003 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc826g00003 325 MobiDBLite consensus disorder prediction 137 163 - -
Stsc826g00003 325 Gene3D - 6 66 - -
Stsc826g00003 325 SMART sant 66 114 IPR001005 -
Stsc826g00003 325 SMART sant 13 63 IPR001005 -
Stsc826g00003 325 MobiDBLite consensus disorder prediction 113 134 - -
Stsc826g00003 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc826g00003 325 FunFam MYB-related transcription factor 13 66 - -
Stsc826g00003 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Stsc826g00003 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc826g00003 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc826g00003 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc826g00003 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc826g00003 Stsc-Chr826 16705 18212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc826g00003 1 195 MYB Transcription Factor Family AT2G31180 52.308 2.12e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc826g00003 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc826g00003 K09422 - gmx:778184 302.753