Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc824g00001 ATGAACAACGCTCTCTTTCTATCCACACTCCTGTTCCTCTTATCCTCCGCCATTGTTTCCGGCGGCGATCTAGCCTCCGACAGAGCAGCCCTCCTAACCCTACGCGCCACCGTAGGCGGTCGCTCCCTCCTCTGGAACCTCACGGAACAGAATCCATGCTCATATACCGGTGTGTTCTGCGAAAATGATAAGAGAAACAGAGTAACTACGTTGAGGCTCCCAGGCATGGGACTCTCAGGGAATCTTCCATTGGGTTTGGGTAACCTCACTGAGCTTCAAACCCTATCTCTCCGATTCAACGCACTCACCGGTCCCATTCCCTCCGATTTCGTCAAGCTCACCTCTCTCAGAAACCTCTACCTTCAGGGGAACTTCTTCGATGGCCAAATCCCTGATTTCTTGTTCTCTATGCAGAATTTGGTTAGGTTGAATTTGGGGAAGAACAATTTCAGCGGCGAGATCTCGCCCAAGTTCAATTCTCTTACTCGTTTGGATACTCTGTACTTAGAGAATAATCACTTCACTGGGAGCATCCCCGACCTTAGTGTTCCGCCTCTGCATCAGTTCAACGTGTCGAATAATCAGTTGAATGGTTCGGTTCCGGAGCGGTTTTCGCGGTTCGATGGAAGCGCTTTTGCTGGGAATGAGCTCTGTGGGAAGCCCCTTGAAGCTTGCCCTGGTGGTGACAATGGCGGAGGAGGGGGAGGGAGCCATAAGAAGAAGAACAAGCTCTCTGGTGGTGCAATTGCGGGTATTGTTATTGGTTCTGTAATTGGAGCCATTTTGATTCTGCTGCTTTTGTTCTTGTTATGCAGAAAATCCAGAAAGAGTGATTCCAGGGAGGTTGCTGGGGCTGCACCTCCCAAGAGTGTTGAGGTTGCTGACGTGGCACGTGATAGTGGAGGTGTTGGTGGTGGTGGTGGTGCTAGTGGCTCTTCGGCTGTTGCAGCTTCAAAGGCTGAAGGCAAGAGCAATGGTGGTGGGAAAAGTTTGATTTTCTTTGGTGATGTGAATAGGCCGTTTGATCTTGAAGAGTTGCTGAGGGCTTCTGCTGAGGTTCTTGGGAAAGGGACATTCGGAACGACGTATAAGGCGACGATGGATTTGGGGATCAGCGTGGCAGTGAAGCGGCTGAAGGACGTTACCCTGCCAGAGAGGGAGTTCAGGGAGAAGATAGAGCAAGTTGGGAAGATGGTTCATGAGAATTTGGTTCCACTCAGGGGTTACTACTTCAGCAAAGATGAGAAGCTTGTTGTCTATGATTACATGCCCATGGGAAGCTTGTCTGCACTATTACATGCGAATAATGGAGCTGGCAGGACTCCCCTGAATTGGGAAACAAGGTCCGCCATTGCTCTTGGAGCTGCTCGCGGGGTTGCATACCTACATTCACATGGACCAACATCCTCCCATGGAAACATCAAATCCTCGAATATCCTTCTCACAAAATCATTCGAAGCTCGTGTCTCCGACTTTGGCCTTGCTCATCTTGCTCTCCCGACCGCCACACCGAATCGTATTTCCGGTTATCGCGCCCCAGAAGTTACAGATTCTCGCAAAGTATCACAAAAGGCAGACGTCTACAGCTTTGGTATAATGCTCTTGGAGCTTCTCACGGGGAAGGCCCCCACTCATTCCTCACTGAATGAAGATGGTGTAGACCTCCCAAGATGGGTTCAGTCCGTGGTCCAAGACGAGTGGAACACCGAGGTTTTCGATGTGGAGCTCCTTAGGTACCAGAATGTTGAGGATGAAATGGTTAAGCTCTTGCAGCTTGCGCTCGAATGCACGGCTCAATACCCAGACAAGAGACCTTCAATGGATGTGGTTGAAAGGAGGATTCAGGAAATTTCACGTTCTAGTTTAGAGAGAGAGGAAGAAGAAGAAAAGAATGAATTTTCCCAGCAGTACTACTCTGTTGATTCTGGTCCCCCACAAGCTTGA 1944 0.4974 MNNALFLSTLLFLLSSAIVSGGDLASDRAALLTLRATVGGRSLLWNLTEQNPCSYTGVFCENDKRNRVTTLRLPGMGLSGNLPLGLGNLTELQTLSLRFNALTGPIPSDFVKLTSLRNLYLQGNFFDGQIPDFLFSMQNLVRLNLGKNNFSGEISPKFNSLTRLDTLYLENNHFTGSIPDLSVPPLHQFNVSNNQLNGSVPERFSRFDGSAFAGNELCGKPLEACPGGDNGGGGGGSHKKKNKLSGGAIAGIVIGSVIGAILILLLLFLLCRKSRKSDSREVAGAAPPKSVEVADVARDSGGVGGGGGASGSSAVAASKAEGKSNGGGKSLIFFGDVNRPFDLEELLRASAEVLGKGTFGTTYKATMDLGISVAVKRLKDVTLPEREFREKIEQVGKMVHENLVPLRGYYFSKDEKLVVYDYMPMGSLSALLHANNGAGRTPLNWETRSAIALGAARGVAYLHSHGPTSSHGNIKSSNILLTKSFEARVSDFGLAHLALPTATPNRISGYRAPEVTDSRKVSQKADVYSFGIMLLELLTGKAPTHSSLNEDGVDLPRWVQSVVQDEWNTEVFDVELLRYQNVEDEMVKLLQLALECTAQYPDKRPSMDVVERRIQEISRSSLEREEEEEKNEFSQQYYSVDSGPPQA 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc824g00001 647 Gene3D Phosphorylase Kinase; domain 1 316 422 - -
Stsc824g00001 647 Gene3D Transferase(Phosphotransferase) domain 1 423 642 - -
Stsc824g00001 647 MobiDBLite consensus disorder prediction 618 634 - -
Stsc824g00001 647 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Stsc824g00001 647 FunFam pollen receptor-like kinase 1 317 422 - -
Stsc824g00001 647 PANTHER OS05G0588300 PROTEIN 5 624 - -
Stsc824g00001 647 SUPERFAMILY Protein kinase-like (PK-like) 352 612 IPR011009 -
Stsc824g00001 647 SUPERFAMILY L domain-like 48 206 - -
Stsc824g00001 647 FunFam Probable inactive receptor kinase At1g48480 423 625 - -
Stsc824g00001 647 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Stsc824g00001 647 Pfam Protein tyrosine and serine/threonine kinase 352 611 IPR001245 GO:0004672|GO:0006468
Stsc824g00001 647 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Stsc824g00001 647 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Stsc824g00001 647 CDD STKc_IRAK 354 617 - -
Stsc824g00001 647 MobiDBLite consensus disorder prediction 618 647 - -
Stsc824g00001 647 ProSiteProfiles Protein kinase domain profile. 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc824g00001 647 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc824g00001 Stsc-Chr824 10939 14153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc824g00001 23 617 Receptor kinase-like Gene Family AT1G48480 58.049 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc824g00001 PK_Tyr_Ser-Thr 3.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc824g00001 - - gmx:100801103 818.92