Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc821g00002 ATGGAAAACAAGGAAGAAACTCAACAATTAGATTATTGTTTATGGGACCCAAGGAAGAGAATTCATCCCAATAAACCAAAAGGGTTACTATTGTATGGTGCTTCTAGTCTTAAACCTAGCAGGCTAGGATCAATGTTATCTTGGTCAACCTCTGCTAAAGATTTGAGGGAATTGGACATAGAAAAAGAGAAAGAAGATGAGACATCTCCAAGGGGTGTGTTAGAAGCTTGTGCTAAAGAATTTAATAACTCTCATGAATCTCAGCAGCAGCAGCAACCATTTGATGAATCAAAGGCAACAAGTCGATCAATTTCAAGCAGGGCAAGGTCTCGGTGGGGTAAATTTTTCAAATTGTGGAAAATAAAATCAACGAAGAATCACCTTCCTTCCTTACACACTCTTAGTATTCCAAAGTTTCGATGGAAGAGCAAAACCTTTAAAGAAGATGCTTCTTCGCATTCTACTCTTAGTAATGGTTTGTACACCTTCAAGTCTGCTTTGATCACTTTTACCCTCTCCGAATTACATCATGCAACCAACAACTTTAGCAGCGAAAATTTAATAGGAAAAGGTGGTTTTGCTGAGGTTTACCAGGGTTGTCTTGAAGAAGGGAAACTAATAGCAGTGAAGAAAATAACAAATGGGAGCATTGAAGAAAAGACAGCATGTTTTCTATCAGAGCTTGGTGTTATTGCTCATATTGATCATCCTAATACTGCCAAGATTATTGGTTGTTGTGTTGAAGGAGAAATGCATCTTGTCTTTGCACTTTCTCCTCTTGGAAGTTTAGGATCACTTCTTCATGGGCCAAATAAAGAAAAATTAGATTGGAGTAAAAGGTACAAGATTGCTTTGGGAATAGCTGATGGGTTATTGTATCTGCATGAGAGTTGTCACAGACGAATTATTCATAGAGATATTAAAGGAGACAATATTTTGCTCACTGAGAAATTTGACCCACAGGCCAAACCTTTGCTTGAAGCTAAGAATATTGAAGCACTTGTTGATCCTTCTCTTGGTGATGATTATGATAAGGACCAAATAGGTCATGTTGTTTTCACTGCATCAAAGTGTATTGAGCAATCTCCTCTTTTAAGACCTTGCATGAGTGAGGTTGTAGCCCTACTAAGAGGTGATAAGTGTGAGTTAGAAACTACAAGTACAGGGCAAAGAAAGGCTCTTCAAAGAACATACTCAGAAGAGTTACTAGATGCACAAGAATACAACTCAACAAGATATCTTAGAGATCTCAGTCGACATAGACAACTTGCATTGGGTTCTTGTGAATCTTGA 1293 0.379 MENKEETQQLDYCLWDPRKRIHPNKPKGLLLYGASSLKPSRLGSMLSWSTSAKDLRELDIEKEKEDETSPRGVLEACAKEFNNSHESQQQQQPFDESKATSRSISSRARSRWGKFFKLWKIKSTKNHLPSLHTLSIPKFRWKSKTFKEDASSHSTLSNGLYTFKSALITFTLSELHHATNNFSSENLIGKGGFAEVYQGCLEEGKLIAVKKITNGSIEEKTACFLSELGVIAHIDHPNTAKIIGCCVEGEMHLVFALSPLGSLGSLLHGPNKEKLDWSKRYKIALGIADGLLYLHESCHRRIIHRDIKGDNILLTEKFDPQAKPLLEAKNIEALVDPSLGDDYDKDQIGHVVFTASKCIEQSPLLRPCMSEVVALLRGDKCELETTSTGQRKALQRTYSEELLDAQEYNSTRYLRDLSRHRQLALGSCES 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc821g00002 430 ProSiteProfiles Protein kinase domain profile. 182 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc821g00002 430 Gene3D Transferase(Phosphotransferase) domain 1 321 394 - -
Stsc821g00002 430 Pfam Protein tyrosine and serine/threonine kinase 185 317 IPR001245 GO:0004672|GO:0006468
Stsc821g00002 430 SMART serkin_6 182 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc821g00002 430 SUPERFAMILY Protein kinase-like (PK-like) 162 318 IPR011009 -
Stsc821g00002 430 PANTHER OS08G0249100 PROTEIN 322 420 IPR046958 -
Stsc821g00002 430 MobiDBLite consensus disorder prediction 82 102 - -
Stsc821g00002 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Stsc821g00002 430 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Stsc821g00002 430 Gene3D Transferase(Phosphotransferase) domain 1 259 320 - -
Stsc821g00002 430 Gene3D Phosphorylase Kinase; domain 1 142 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc821g00002 Stsc-Chr821 9142 16130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc821g00002 325 380 Receptor kinase-like Gene Family AT1G53420 41.071 4.37e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc821g00002 PK_Tyr_Ser-Thr 3.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc821g00002 - - aip:107615479 405.986