Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc811g00001 ATGTTACTCACTACACTCTTCAAGTTCAAACTCACACTAACCATTACTACTCTCTTCACACTCTCTTCACTTGCCACGTCACACTACTCTTCTTCTTCTTCTTCCCAACAACCACCTTCCTCTCCCTCTTCTTCCACTTCCCTCTCCGAGTGGCGATCCGCGCACGCCACCTACTACGCCGCCGCCGACCCTCGCGACGCTGTCGGCGGCGCGTGCGGCTACGGCGACCTTATGAAAGCAGGCTACGGCATGGCAACCGTCGGTCTCAGCGAGGCGCTCTTTGAACGCGGCCAGATCTGCGGCGCCTGCTTCGAGGTCAAGTGCGTGGAAGAACTCAAATGGTGCATACCTGGAACTTCCATTATTGTAACCGCCACGAACTTCTGTGCTCCCAATTACGGCTTTGATAATGAAGGTGGCGGTCACTGTAACCCTCCGAACAAGCATTTTGTGCTTCCGATTGAGGCATTTGAGAAGATCGCGATTTGGAAGGCTGGCAACATGCCGGTCCAATATAGAAGGATACAATGCAGAAGGGAAGGAGGAATCCGATTTACAATCACTGGCTCTGGTATCTTCCTTTCGGTGCTGATCAGCAATGTTGCTGGTCATGGAGACATAGTCGCCGTGAAGGTTAAGGGCTCCAGAACAGGTTGGCTTCCAATGGGTCGGAATTGGGGCCAGAACTGGCACATAAATGCGTTACTACAGAACCAACCTCTTTCCTTTGAGGTTACTGGTAGTGATGGAAAAACAGTTACATCCTACAATGTTGCCCCCAAGGATTGGAGCTTTGGACAAACATTTGAAGGCAAGCAATTTGAGCCTTAA 831 0.5102 MLLTTLFKFKLTLTITTLFTLSSLATSHYSSSSSSQQPPSSPSSSTSLSEWRSAHATYYAAADPRDAVGGACGYGDLMKAGYGMATVGLSEALFERGQICGACFEVKCVEELKWCIPGTSIIVTATNFCAPNYGFDNEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIQCRREGGIRFTITGSGIFLSVLISNVAGHGDIVAVKVKGSRTGWLPMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNVAPKDWSFGQTFEGKQFEP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc811g00001 276 PANTHER EXPANSIN-A15 23 274 IPR002963 GO:0009664
Stsc811g00001 276 Pfam Lytic transglycolase 87 172 IPR009009 -
Stsc811g00001 276 SUPERFAMILY PHL pollen allergen 179 271 IPR036749 -
Stsc811g00001 276 SMART dpbb_1 86 172 IPR007112 -
Stsc811g00001 276 PRINTS Expansin signature 157 170 IPR002963 GO:0009664
Stsc811g00001 276 PRINTS Expansin signature 257 273 IPR002963 GO:0009664
Stsc811g00001 276 PRINTS Expansin signature 228 249 IPR002963 GO:0009664
Stsc811g00001 276 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Stsc811g00001 276 PRINTS Expansin signature 108 119 IPR002963 GO:0009664
Stsc811g00001 276 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Stsc811g00001 276 PRINTS Expansin signature 81 95 IPR002963 GO:0009664
Stsc811g00001 276 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Stsc811g00001 276 PRINTS Expansin signature 181 193 IPR002963 GO:0009664
Stsc811g00001 276 FunFam Expansin 182 274 - -
Stsc811g00001 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 69 182 IPR007112 -
Stsc811g00001 276 Gene3D - 182 274 IPR036749 -
Stsc811g00001 276 PRINTS Expansin/Lol pI family signature 165 181 IPR007118 GO:0005576
Stsc811g00001 276 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Stsc811g00001 276 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Stsc811g00001 276 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Stsc811g00001 276 PRINTS Expansin/Lol pI family signature 90 108 IPR007118 GO:0005576
Stsc811g00001 276 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Stsc811g00001 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 192 271 IPR007117 -
Stsc811g00001 276 Pfam Expansin C-terminal domain 183 260 IPR007117 -
Stsc811g00001 276 CDD DPBB_EXPA_N 50 177 - -
Stsc811g00001 276 Gene3D - 34 178 IPR036908 -
Stsc811g00001 276 SUPERFAMILY Barwin-like endoglucanases 46 200 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc811g00001 Stsc-Chr811 3216 5445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc811g00001 50 275 Expansin Gene Family AT3G03220 83.628 3.73e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc811g00001 - - gmx:100784516 454.521