Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc80g00020 ATGGCTAGGTCTGCCAAAGGCCACCAAGAAGAATTGGACGACGACGACGATGACCACTTCACTGCTGACACCTCTTCTCCTCACACAGTGAAGTTGGATGAACAGAATAGTGGGAAGAGGGTGAACCCTCATCGCTCGAAGCATTCAGAGACTGAGCAGCGCAGAAGGAGTAAGATTAATGAAAGGTTTCAGGTTCTGAGAGATCTTATTCCTCAAAATGATCAAAAAAGAGATAAGGCTTCCTTTTTATTGGAGGTTATTGAGTATATTCAGTTTCTCCAGGAAAAGTTGCAAATTTATGAACAGACTTGTGAAGGGTGGAATCAGGAACCAACGAAATTAATCCCATGGAGAGGTCATCATGGACCTGCAGAAAATAAGACAGATGCTTCTCAAGCTATGCAAAATGGATCTGCTCATGAGAAAAATGATGTCTCTCCATTATTGCCCAAAAATGTACATAACCCAATAGAGTCTGACTTGTCAACAACTACTATCCAAAAGGGCCACACCATCTGTTCATCTGCAGAAGCAGTTCCATTGGGCATGCAAATGAGACTGGATGTATTTGACCCAGTTGTAAGCAGTGGTATGCCAACCCAACGTCTGCATCAACCTATATCTAATGCTGATATGTCTTTCCAAATCCAGCCCCAAGTTTTGCTTAGTAAACCAAGCAGGGGCAACTATATGGTTTCGGATAATATATTGATGGAACATGAAGAGCTGACAAATGAAAGTGAAACCGAAAGCATTTCAAATGCGTACTCTCAAGGAGTATTAGATACTCTTACACAAGCTCTGCAGTCTTCAGGCGTGGATCTGTCTCAGACTAATGTTTCAGTGCAAATCGATGTTGGTAGAAGATCAAATCCGGGCTTTACCCCTTCTGCATCTAGCTCAAAGGTGTATGGAAACCAGTTTGTGACCAATAGAGTTAATTACTGCAGTGAAGACTCTGATCAAAGTCTAAAGAGGCTCAGAAGAGATGCAACCTAA 999 0.4224 MARSAKGHQEELDDDDDDHFTADTSSPHTVKLDEQNSGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTCEGWNQEPTKLIPWRGHHGPAENKTDASQAMQNGSAHEKNDVSPLLPKNVHNPIESDLSTTTIQKGHTICSSAEAVPLGMQMRLDVFDPVVSSGMPTQRLHQPISNADMSFQIQPQVLLSKPSRGNYMVSDNILMEHEELTNESETESISNAYSQGVLDTLTQALQSSGVDLSQTNVSVQIDVGRRSNPGFTPSASSSKVYGNQFVTNRVNYCSEDSDQSLKRLRRDAT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc80g00020 332 MobiDBLite consensus disorder prediction 33 59 - -
Stsc80g00020 332 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Stsc80g00020 332 MobiDBLite consensus disorder prediction 1 59 - -
Stsc80g00020 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 329 IPR044295 GO:0003700|GO:0006351|GO:0046983
Stsc80g00020 332 SMART finulus 49 99 IPR011598 GO:0046983
Stsc80g00020 332 CDD bHLH_AtBIM_like 45 118 - -
Stsc80g00020 332 Gene3D - 42 114 IPR036638 GO:0046983
Stsc80g00020 332 MobiDBLite consensus disorder prediction 118 148 - -
Stsc80g00020 332 MobiDBLite consensus disorder prediction 128 142 - -
Stsc80g00020 332 Coils Coil 90 110 - -
Stsc80g00020 332 Coils Coil 317 332 - -
Stsc80g00020 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 121 IPR036638 GO:0046983
Stsc80g00020 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc80g00020 Stsc-Chr80 118042 121045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc80g00020 3 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.063 4.01e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc80g00020 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc80g00020 - - ahf:112797954 476.863