Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc80g00017 ATGGTTGATCAAGCTGATTTAGTCATCATATGTGTCACTGTTGGTGTGGCCCTTGGAGTTCTCATAGCTTGCGCCACATTCTTCGCCGTGAGGTGGTACAAGAAGCACGCTCGATCTGCAAATGATCCTGGTTCAACAACTCTTCCAATAAGAACAAATGGATTAGGAGCAAGCACTGAGATTAGTGCTTCTCTCACAACTTCCATAGCCATTTCTGGATCAGATAATCTACAAAGGAAGTCACACTATTTCAGTTGGTGGAATCATCAAACTAAGGATCCACTTTCCCCTGCTTCAGGAATTCTCAAGTACTCTTACAAAGAAATTCAAAAGGCCACACAGAATTTCACAAATATATTGGGAGAAGGATCATTTGGAACAGTTTATAAAGCCACAATGGCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCACCTAACTCCAAACAAGGGGAGAAGGAGTTCCAGACAGAGGTACTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTGAACTTGTTAGGATACTGTGTAGATAAAGGACAGCGTATGTTAGTTTATGAATTCATGAGCAATGGAAGTTTATCAAACCTTTTATATGATGAAGACAGGGATCTGAATTGGGATGACAGGCTGCAGATTGCTGTTGATATTTCTCATGGAATACAATACCTTCATGAAGGAGCAGTCCCGCCAGTGATACATCGCGATTTGAAATCGGCGAACATATTGCTAGATCATTCCATGAGAGCTAAGGTGGCTGATTTTGGGCTATCAAAGGAAGAGGTATTTGATGACCAGAAATCTGGCCTAAAAGGCACATATGGCTATATGGATCCAGCATACATATCCACAAGCAAGTTCACAATGAAGAGTGACATTTACAGTTTTGGTATAATAATCTTTGAGCTCATTACAGCCATCCACCCCCACCAAAATTTGATGGAATACATCAACCTTGCTGCAATGGACTATGATGGCATAGATGGGATTCTTGATTCACAACTTGTGGGGAAATGCAACCTTGAAGAGGTGAGGAAGTTAGCCAAAATTGCTCACAAATGTCTGCATAAATCACCAAGGAAAAGGCCCTCCATTGGTGAGATATCACAAGGTATAATGATGATTAAGCAAAGGCGCCTTGTGAAGGAAGATACCATGTCATTTGCAAGCAGTAATAATTACTCAAGAACATTGAGTAGGATAGAGGATCAACAAGTTGAGTTAAGTAGGATAGCCACTACCATGAACCAAAGAGAAGGTAGATGA 1269 0.4137 MVDQADLVIICVTVGVALGVLIACATFFAVRWYKKHARSANDPGSTTLPIRTNGLGASTEISASLTTSIAISGSDNLQRKSHYFSWWNHQTKDPLSPASGILKYSYKEIQKATQNFTNILGEGSFGTVYKATMATGEVVAVKMLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCVDKGQRMLVYEFMSNGSLSNLLYDEDRDLNWDDRLQIAVDISHGIQYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEVFDDQKSGLKGTYGYMDPAYISTSKFTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGIDGILDSQLVGKCNLEEVRKLAKIAHKCLHKSPRKRPSIGEISQGIMMIKQRRLVKEDTMSFASSNNYSRTLSRIEDQQVELSRIATTMNQREGR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc80g00017 422 CDD STKc_IRAK 120 371 - -
Stsc80g00017 422 Pfam Protein tyrosine and serine/threonine kinase 116 371 IPR001245 GO:0004672|GO:0006468
Stsc80g00017 422 Gene3D Phosphorylase Kinase; domain 1 80 189 - -
Stsc80g00017 422 SMART serkin_6 114 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc80g00017 422 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 88 189 - -
Stsc80g00017 422 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 385 - -
Stsc80g00017 422 ProSitePatterns Protein kinases ATP-binding region signature. 120 142 IPR017441 GO:0005524
Stsc80g00017 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Stsc80g00017 422 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 190 398 - -
Stsc80g00017 422 Gene3D Transferase(Phosphotransferase) domain 1 190 397 - -
Stsc80g00017 422 ProSiteProfiles Protein kinase domain profile. 114 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc80g00017 422 SUPERFAMILY Protein kinase-like (PK-like) 81 370 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc80g00017 Stsc-Chr80 99578 103429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc80g00017 105 378 Receptor kinase-like Gene Family AT4G02010 41.096 7.03e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Stsc80g00017 PK_Tyr_Ser-Thr 4.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc80g00017 - - gmx:100794239 672.159