Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc80g00007 ATGGATTTACTAAGTGAGTGCAAGGCAAGTGAGGTGTTTGAAGGGCAAGTTGTTGTGTACAAACACCTCTATGCCTACATATATTCCATGTGTCTCAAATGGTGTCTTGAGCTCAACATACCTGACATTATCCACAACCATGGCCAACCCATTTCCCTTCATGACTTAGTCTCAACCTTGCAAGTTCCGCCGTCCAAAATAGGCGGCGTTCCGCGCCTCATGCGTTACCTTGCCCATCATGGTTTCTTCCGCGCACATGACTCTCAAATAGTGAAGTTGGCATTGAAGGATCATAGTGATGTGTTTGAAGGACTGGAATCAATTGTGGATGTTGGTGGTGGAAATGGAACAATATCTAAGATCATCAATGAGTTGTTTCCCCAATTGAAATGCATAGTGTTTGACCTTCCCCATGTTGTGGAGAATTTGTTGGGAAATAACAATTTGAGCTTTGTTGGTGGCGATATGTTTCATTCTATCCCTCAGGCTGATGCTCTTTTACTTAAGTGGATTTTGCACGATTGGAACGATGAAAATTGTGTTAAAATATTAAAACAATGCAAGGATGCGATTTCAAAAAATAGTAATGGAGGAAAAATAATTATCATAGATTGTGTGATAAATGAAAAATGTGACGAGTATGGACATACTCAAATGAAGTTAATGATGGATATTTTATATTATGACAAGTTTGAATGGGAAGGAGAGAAGCGAAGAAGAATTGAAGAGACTATTTTTGGAAGCTGGGTTTCAAGATTATAA 762 0.3885 MDLLSECKASEVFEGQVVVYKHLYAYIYSMCLKWCLELNIPDIIHNHGQPISLHDLVSTLQVPPSKIGGVPRLMRYLAHHGFFRAHDSQIVKLALKDHSDVFEGLESIVDVGGGNGTISKIINELFPQLKCIVFDLPHVVENLLGNNNLSFVGGDMFHSIPQADALLLKWILHDWNDENCVKILKQCKDAISKNSNGGKIIIIDCVINEKCDEYGHTQMKLMMDILYYDKFEWEGEKRRRIEETIFGSWVSRL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc80g00007 253 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 253 IPR016461 GO:0008168
Stsc80g00007 253 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Stsc80g00007 253 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 79 228 IPR029063 -
Stsc80g00007 253 Pfam O-methyltransferase domain 88 223 IPR001077 GO:0008171
Stsc80g00007 253 PANTHER O-METHYLTRANSFERASE 19 83 IPR016461 GO:0008168
Stsc80g00007 253 Gene3D Vaccinia Virus protein VP39 98 230 IPR029063 -
Stsc80g00007 253 SUPERFAMILY "Winged helix" DNA-binding domain 10 102 IPR036390 -
Stsc80g00007 253 Gene3D - 4 97 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc80g00007 Stsc-Chr80 27860 29099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc80g00007 68 224 Monolignol Biosynthesis Gene Families AT5G54160 38.012 1.41e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc80g00007 - K22588 gmx:100800912 265.003